miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24017 5' -62.8 NC_005262.1 + 21542 0.66 0.400266
Target:  5'- aGCUCGCGguccugaagcagaUGcCGCCGccuggaaACGAGGGCG-GCu -3'
miRNA:   3'- -CGGGCGC-------------GC-GUGGC-------UGCUCCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 63050 0.66 0.401979
Target:  5'- aGUCCaGCaUGCGCCGGCacgucaucGcGGGCGAGUa -3'
miRNA:   3'- -CGGG-CGcGCGUGGCUG--------CuCCCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 13147 0.66 0.41936
Target:  5'- cGCCgCGCGCGCugCG-CGGcacaacuccuuGGCGGGa -3'
miRNA:   3'- -CGG-GCGCGCGugGCuGCUc----------CCGCUCg -5'
24017 5' -62.8 NC_005262.1 + 62794 0.66 0.410612
Target:  5'- cGCgCCGaaaGCGgAaaucCCGACGaAGGGCGAcGUg -3'
miRNA:   3'- -CG-GGCg--CGCgU----GGCUGC-UCCCGCU-CG- -5'
24017 5' -62.8 NC_005262.1 + 10776 0.66 0.401979
Target:  5'- cGCCCGCGCcggGCGCgCGGuacUGcuGcGCGAGCu -3'
miRNA:   3'- -CGGGCGCG---CGUG-GCU---GCucC-CGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 2654 0.66 0.41936
Target:  5'- uGCCUGCGCgGCGCC-----GGGCG-GCg -3'
miRNA:   3'- -CGGGCGCG-CGUGGcugcuCCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 52047 0.66 0.410612
Target:  5'- cGCCgGCGCcuaCAUCGAgucCGGGGuGCGGGa -3'
miRNA:   3'- -CGGgCGCGc--GUGGCU---GCUCC-CGCUCg -5'
24017 5' -62.8 NC_005262.1 + 45757 0.66 0.401979
Target:  5'- uCCCGCgaacGCGaCGCCGaucggcaucgcgGCGaAGGGCG-GCg -3'
miRNA:   3'- cGGGCG----CGC-GUGGC------------UGC-UCCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 35876 0.66 0.393462
Target:  5'- gGCgaCGCGCGCACCuauCGgcucauccacGGGGCcGGCa -3'
miRNA:   3'- -CGg-GCGCGCGUGGcu-GC----------UCCCGcUCG- -5'
24017 5' -62.8 NC_005262.1 + 52724 0.66 0.401122
Target:  5'- aGgCCGCGC-UGCUGACGAaguucacgggcugGGGCGccAGCg -3'
miRNA:   3'- -CgGGCGCGcGUGGCUGCU-------------CCCGC--UCG- -5'
24017 5' -62.8 NC_005262.1 + 57764 0.66 0.410612
Target:  5'- -aUUGCGCGCAauGGCGugcugguuGGCGAGCa -3'
miRNA:   3'- cgGGCGCGCGUggCUGCuc------CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 17570 0.66 0.401979
Target:  5'- cGgCgGCGCGCgaaGCCGAgGAGaagcuggcGGCGcAGCg -3'
miRNA:   3'- -CgGgCGCGCG---UGGCUgCUC--------CCGC-UCG- -5'
24017 5' -62.8 NC_005262.1 + 47001 0.66 0.393462
Target:  5'- gGCgCGCGaCGCAgaugggCGAcauCGAGGGCGcAGCc -3'
miRNA:   3'- -CGgGCGC-GCGUg-----GCU---GCUCCCGC-UCG- -5'
24017 5' -62.8 NC_005262.1 + 16481 0.66 0.401979
Target:  5'- uCCCGC-UGC-CgGACGAgcuGGGCGAGg -3'
miRNA:   3'- cGGGCGcGCGuGgCUGCU---CCCGCUCg -5'
24017 5' -62.8 NC_005262.1 + 52893 0.66 0.410612
Target:  5'- -gUCGCGCacuaCACCaGCGAGGGCGuGa -3'
miRNA:   3'- cgGGCGCGc---GUGGcUGCUCCCGCuCg -5'
24017 5' -62.8 NC_005262.1 + 3497 0.66 0.410612
Target:  5'- cGCCCGaCGCGgAUCGGCuuacGGUGGGUu -3'
miRNA:   3'- -CGGGC-GCGCgUGGCUGcuc-CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 54900 0.66 0.39093
Target:  5'- cGCgCCGCGCcaguucgacggcucGCACCuGACGcugccGGGCGuGUc -3'
miRNA:   3'- -CG-GGCGCG--------------CGUGG-CUGCu----CCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 5794 0.66 0.393462
Target:  5'- uGCgCCGCGCGCAUgcaCGcguucAUGAGGGaCuGGCg -3'
miRNA:   3'- -CG-GGCGCGCGUG---GC-----UGCUCCC-GcUCG- -5'
24017 5' -62.8 NC_005262.1 + 16583 0.66 0.393462
Target:  5'- aGCaggCGCGUGUGCUGGuCGAGGcgGCGaAGCa -3'
miRNA:   3'- -CGg--GCGCGCGUGGCU-GCUCC--CGC-UCG- -5'
24017 5' -62.8 NC_005262.1 + 62648 0.66 0.393462
Target:  5'- cGCCCGauuuGCG-AgCGuCGGGGGUGGGUu -3'
miRNA:   3'- -CGGGCg---CGCgUgGCuGCUCCCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.