miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24017 5' -62.8 NC_005262.1 + 27529 1.12 0.000177
Target:  5'- uGCCCGCGCGCACCGACGAGGGCGAGCu -3'
miRNA:   3'- -CGGGCGCGCGUGGCUGCUCCCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 60625 0.82 0.029451
Target:  5'- cGCCaUGCGCaCGCUGGCGAGcGGCGAGCa -3'
miRNA:   3'- -CGG-GCGCGcGUGGCUGCUC-CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 62896 0.82 0.031114
Target:  5'- aCCCGCcaGCGCGCCGACGAGcuGGCGcGCa -3'
miRNA:   3'- cGGGCG--CGCGUGGCUGCUC--CCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 13475 0.79 0.053282
Target:  5'- aGCCCGCGCGCgucgcgcgcuacucGCUGGCGAaGGCGAagGCg -3'
miRNA:   3'- -CGGGCGCGCG--------------UGGCUGCUcCCGCU--CG- -5'
24017 5' -62.8 NC_005262.1 + 6407 0.78 0.05671
Target:  5'- -gCgGCGgGCGCCGACGAGaggcggccGGCGAGCg -3'
miRNA:   3'- cgGgCGCgCGUGGCUGCUC--------CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 31067 0.78 0.059864
Target:  5'- cGCCgaCGCGCuCGCCGACcugaAGGGCGAGCc -3'
miRNA:   3'- -CGG--GCGCGcGUGGCUGc---UCCCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 59922 0.78 0.061504
Target:  5'- aGCCCGUGCGCAUccagaucaaCGACGAGGcGCucGCg -3'
miRNA:   3'- -CGGGCGCGCGUG---------GCUGCUCC-CGcuCG- -5'
24017 5' -62.8 NC_005262.1 + 54125 0.77 0.074261
Target:  5'- cGCCCGUGCGC-UCGAUGGugcuguaGGCGAGCa -3'
miRNA:   3'- -CGGGCGCGCGuGGCUGCUc------CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 61619 0.77 0.076075
Target:  5'- aGCgCGCGCGC-CUGAaggagcuCGAGGGCGAGg -3'
miRNA:   3'- -CGgGCGCGCGuGGCU-------GCUCCCGCUCg -5'
24017 5' -62.8 NC_005262.1 + 10859 0.77 0.076279
Target:  5'- -aCCGCGCGC-CCGGCGcGGGCGGa- -3'
miRNA:   3'- cgGGCGCGCGuGGCUGCuCCCGCUcg -5'
24017 5' -62.8 NC_005262.1 + 50084 0.76 0.082653
Target:  5'- cGCCgGCGCGgcuuCAUCGGCGGGaGCGGGCg -3'
miRNA:   3'- -CGGgCGCGC----GUGGCUGCUCcCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 46919 0.76 0.089534
Target:  5'- cGCCgGCGCGCuuuucUCGGCGAGcGcGCGGGCc -3'
miRNA:   3'- -CGGgCGCGCGu----GGCUGCUC-C-CGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 51506 0.75 0.102224
Target:  5'- cGCCCucGCGCGCGCCGcCGAGcacGCGGuGCa -3'
miRNA:   3'- -CGGG--CGCGCGUGGCuGCUCc--CGCU-CG- -5'
24017 5' -62.8 NC_005262.1 + 16499 0.74 0.119687
Target:  5'- cGCCuCGCgGCGCagaaucccggcgGCCGGCcGGGGCGGGUu -3'
miRNA:   3'- -CGG-GCG-CGCG------------UGGCUGcUCCCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 16725 0.74 0.121897
Target:  5'- cCCUGUGCGCACCGggcagcacgggucuGCGAuguGGGCGcAGCc -3'
miRNA:   3'- cGGGCGCGCGUGGC--------------UGCU---CCCGC-UCG- -5'
24017 5' -62.8 NC_005262.1 + 61145 0.74 0.129427
Target:  5'- cGCUgGCGCaGCAgauCgCGGCGGcGGGCGAGCu -3'
miRNA:   3'- -CGGgCGCG-CGU---G-GCUGCU-CCCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 2843 0.74 0.129427
Target:  5'- aCCCGCcgccgugcugaaGCGCAUCcgggaccucgaGGCGcAGGGCGAGCg -3'
miRNA:   3'- cGGGCG------------CGCGUGG-----------CUGC-UCCCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 49351 0.73 0.132833
Target:  5'- cGCgCCGCGCuCGCUGACGAcucGGCGAcGCg -3'
miRNA:   3'- -CG-GGCGCGcGUGGCUGCUc--CCGCU-CG- -5'
24017 5' -62.8 NC_005262.1 + 12731 0.73 0.135266
Target:  5'- cGCCgCGCGCGCuucuucuucacgguGCCGagcaaugcgGCGAGGGaGGGCg -3'
miRNA:   3'- -CGG-GCGCGCG--------------UGGC---------UGCUCCCgCUCG- -5'
24017 5' -62.8 NC_005262.1 + 57029 0.73 0.136321
Target:  5'- cGCCCGCGCGgAUCGGCGuGcGCuucucGAGCg -3'
miRNA:   3'- -CGGGCGCGCgUGGCUGCuCcCG-----CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.