miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24017 5' -62.8 NC_005262.1 + 675 0.68 0.307808
Target:  5'- uGCauGCGCGUuaucaCGAUGAgcugaagcgguuGGGCGAGCg -3'
miRNA:   3'- -CGggCGCGCGug---GCUGCU------------CCCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 1233 0.68 0.300768
Target:  5'- aGCCCGCGCggcaGCAUCGAagccCGcAGcGGCcgcaGAGCa -3'
miRNA:   3'- -CGGGCGCG----CGUGGCU----GC-UC-CCG----CUCG- -5'
24017 5' -62.8 NC_005262.1 + 2028 0.67 0.376784
Target:  5'- uGCuUCGUGCuGC-UCGACGGGGcGCGuAGCg -3'
miRNA:   3'- -CG-GGCGCG-CGuGGCUGCUCC-CGC-UCG- -5'
24017 5' -62.8 NC_005262.1 + 2654 0.66 0.41936
Target:  5'- uGCCUGCGCgGCGCC-----GGGCG-GCg -3'
miRNA:   3'- -CGGGCGCG-CGUGGcugcuCCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 2843 0.74 0.129427
Target:  5'- aCCCGCcgccgugcugaaGCGCAUCcgggaccucgaGGCGcAGGGCGAGCg -3'
miRNA:   3'- cGGGCG------------CGCGUGG-----------CUGC-UCCCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 2917 0.66 0.428219
Target:  5'- cGCCaGCGCGCAaaCGAgguCGAGGcGCaggugGAGCg -3'
miRNA:   3'- -CGGgCGCGCGUg-GCU---GCUCC-CG-----CUCG- -5'
24017 5' -62.8 NC_005262.1 + 3391 0.67 0.360589
Target:  5'- cGCCC-CGUGC-CCGuccagguacauCGAGacGGCGAGCc -3'
miRNA:   3'- -CGGGcGCGCGuGGCu----------GCUC--CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 3497 0.66 0.410612
Target:  5'- cGCCCGaCGCGgAUCGGCuuacGGUGGGUu -3'
miRNA:   3'- -CGGGC-GCGCgUGGCUGcuc-CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 4409 0.66 0.393462
Target:  5'- gGCCCGCGaggcucgcCGUAgUCGACGAugagGGGCGcGUg -3'
miRNA:   3'- -CGGGCGC--------GCGU-GGCUGCU----CCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 4570 0.66 0.428219
Target:  5'- uCUCGCGCcaGCGgCGGCGcugcucGGGcGUGAGCg -3'
miRNA:   3'- cGGGCGCG--CGUgGCUGC------UCC-CGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 4662 0.67 0.352675
Target:  5'- cGCCCGaGCaGCGCCGcCGcuGGcGCGAGa -3'
miRNA:   3'- -CGGGCgCG-CGUGGCuGCu-CC-CGCUCg -5'
24017 5' -62.8 NC_005262.1 + 4833 0.66 0.401979
Target:  5'- aUCCGUG-GCGCCGGC-AGGaGCucGAGCa -3'
miRNA:   3'- cGGGCGCgCGUGGCUGcUCC-CG--CUCG- -5'
24017 5' -62.8 NC_005262.1 + 4909 0.67 0.329679
Target:  5'- gGCaCUGCGuCGCGCCGGCGAaaccagcgcuacGcGGCcGGCu -3'
miRNA:   3'- -CG-GGCGC-GCGUGGCUGCU------------C-CCGcUCG- -5'
24017 5' -62.8 NC_005262.1 + 5131 0.72 0.159074
Target:  5'- uGCCCGcCGaucagGCGCCGGCc--GGCGAGCa -3'
miRNA:   3'- -CGGGC-GCg----CGUGGCUGcucCCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 5155 0.73 0.151132
Target:  5'- uGCUCgGCGCGCugaucggugacgGCCGGCGucgcGGGcGCGGGCg -3'
miRNA:   3'- -CGGG-CGCGCG------------UGGCUGC----UCC-CGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 5207 0.66 0.410612
Target:  5'- cGCCCGuCGCGCAUggcaggcaucgUGAaccGGGCGcGCa -3'
miRNA:   3'- -CGGGC-GCGCGUG-----------GCUgcuCCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 5257 0.66 0.393462
Target:  5'- cGCCCGCGaCGCcggccgucACCGAUcAGcGcGcCGAGCa -3'
miRNA:   3'- -CGGGCGC-GCG--------UGGCUGcUC-C-C-GCUCG- -5'
24017 5' -62.8 NC_005262.1 + 5794 0.66 0.393462
Target:  5'- uGCgCCGCGCGCAUgcaCGcguucAUGAGGGaCuGGCg -3'
miRNA:   3'- -CG-GGCGCGCGUG---GC-----UGCUCCC-GcUCG- -5'
24017 5' -62.8 NC_005262.1 + 6324 0.72 0.155057
Target:  5'- -aCCGUGCGCG-CGGCGGGcuucagcaucucGGCGGGCa -3'
miRNA:   3'- cgGGCGCGCGUgGCUGCUC------------CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 6407 0.78 0.05671
Target:  5'- -gCgGCGgGCGCCGACGAGaggcggccGGCGAGCg -3'
miRNA:   3'- cgGgCGCgCGUGGCUGCUC--------CCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.