miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24017 5' -62.8 NC_005262.1 + 59589 0.71 0.194716
Target:  5'- -aUCGCGCGCgacuacgaucagGCCGugGucguGGGCGAGa -3'
miRNA:   3'- cgGGCGCGCG------------UGGCugCu---CCCGCUCg -5'
24017 5' -62.8 NC_005262.1 + 14163 0.73 0.151132
Target:  5'- uGUCCGC-CGCGCCGAgGAGuGCG-GCa -3'
miRNA:   3'- -CGGGCGcGCGUGGCUgCUCcCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 42255 0.72 0.155057
Target:  5'- aGCgCCGCGCucacuGCGgCGACGAGcGGCacGGGCa -3'
miRNA:   3'- -CG-GGCGCG-----CGUgGCUGCUC-CCG--CUCG- -5'
24017 5' -62.8 NC_005262.1 + 60082 0.72 0.163184
Target:  5'- cGCgCGCGaCGCGCUGACGGGcacgaucaacauGGuCGGGCa -3'
miRNA:   3'- -CGgGCGC-GCGUGGCUGCUC------------CC-GCUCG- -5'
24017 5' -62.8 NC_005262.1 + 44148 0.72 0.176094
Target:  5'- gGCCgGaCGCGCGCgCGAuCGGGcaggagcgcggcGGCGAGCu -3'
miRNA:   3'- -CGGgC-GCGCGUG-GCU-GCUC------------CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 56749 0.72 0.176094
Target:  5'- uGgCCGC-CGCGCUGGCGucGGGCGAcgaGCg -3'
miRNA:   3'- -CgGGCGcGCGUGGCUGCu-CCCGCU---CG- -5'
24017 5' -62.8 NC_005262.1 + 15898 0.71 0.185198
Target:  5'- -gCCGCGUGCGCgCGACGuGGcgccGCGAuGCg -3'
miRNA:   3'- cgGGCGCGCGUG-GCUGCuCC----CGCU-CG- -5'
24017 5' -62.8 NC_005262.1 + 55912 0.71 0.189429
Target:  5'- aGCUCGCGCaGUACgucgaccguccggCGAuCGAGGGCG-GCg -3'
miRNA:   3'- -CGGGCGCG-CGUG-------------GCU-GCUCCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 36121 0.71 0.189905
Target:  5'- -gCUGCGCGauaCGGCGAGG-CGAGCa -3'
miRNA:   3'- cgGGCGCGCgugGCUGCUCCcGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 5155 0.73 0.151132
Target:  5'- uGCUCgGCGCGCugaucggugacgGCCGGCGucgcGGGcGCGGGCg -3'
miRNA:   3'- -CGGG-CGCGCG------------UGGCUGC----UCC-CGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 50332 0.73 0.147298
Target:  5'- cGCCCGcCGCGCAggacgaagcgccCgCGACGAccGCGAGCg -3'
miRNA:   3'- -CGGGC-GCGCGU------------G-GCUGCUccCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 49351 0.73 0.132833
Target:  5'- cGCgCCGCGCuCGCUGACGAcucGGCGAcGCg -3'
miRNA:   3'- -CG-GGCGCGcGUGGCUGCUc--CCGCU-CG- -5'
24017 5' -62.8 NC_005262.1 + 60625 0.82 0.029451
Target:  5'- cGCCaUGCGCaCGCUGGCGAGcGGCGAGCa -3'
miRNA:   3'- -CGG-GCGCGcGUGGCUGCUC-CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 62896 0.82 0.031114
Target:  5'- aCCCGCcaGCGCGCCGACGAGcuGGCGcGCa -3'
miRNA:   3'- cGGGCG--CGCGUGGCUGCUC--CCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 13475 0.79 0.053282
Target:  5'- aGCCCGCGCGCgucgcgcgcuacucGCUGGCGAaGGCGAagGCg -3'
miRNA:   3'- -CGGGCGCGCG--------------UGGCUGCUcCCGCU--CG- -5'
24017 5' -62.8 NC_005262.1 + 31067 0.78 0.059864
Target:  5'- cGCCgaCGCGCuCGCCGACcugaAGGGCGAGCc -3'
miRNA:   3'- -CGG--GCGCGcGUGGCUGc---UCCCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 59922 0.78 0.061504
Target:  5'- aGCCCGUGCGCAUccagaucaaCGACGAGGcGCucGCg -3'
miRNA:   3'- -CGGGCGCGCGUG---------GCUGCUCC-CGcuCG- -5'
24017 5' -62.8 NC_005262.1 + 61619 0.77 0.076075
Target:  5'- aGCgCGCGCGC-CUGAaggagcuCGAGGGCGAGg -3'
miRNA:   3'- -CGgGCGCGCGuGGCU-------GCUCCCGCUCg -5'
24017 5' -62.8 NC_005262.1 + 16725 0.74 0.121897
Target:  5'- cCCUGUGCGCACCGggcagcacgggucuGCGAuguGGGCGcAGCc -3'
miRNA:   3'- cGGGCGCGCGUGGC--------------UGCU---CCCGC-UCG- -5'
24017 5' -62.8 NC_005262.1 + 61145 0.74 0.129427
Target:  5'- cGCUgGCGCaGCAgauCgCGGCGGcGGGCGAGCu -3'
miRNA:   3'- -CGGgCGCG-CGU---G-GCUGCU-CCCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.