miRNA display CGI

Results 1 - 11 of 11 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
24018	3'	-56.8	NC_005262.1	+	17702	0.66	0.691832
	Target:  5'- aGCUCGCGCugcuggcgCUCCagCUCCgcgcGCUgcGCCGc -3' miRNA:   3'- gUGAGCGCG--------GAGGa-GAGGa---UGA--UGGC- -5'
24018	3'	-56.8	NC_005262.1	+	59631	0.66	0.681184
	Target:  5'- aACcucgCGCGCCagUCUCUCCUcgcGCUggucGCCGa -3' miRNA:   3'- gUGa---GCGCGGa-GGAGAGGA---UGA----UGGC- -5'
24018	3'	-56.8	NC_005262.1	+	58730	0.67	0.638243
	Target:  5'- aACUCGCGCgC-CCggccgCUCg-ACUGCCGa -3' miRNA:   3'- gUGAGCGCG-GaGGa----GAGgaUGAUGGC- -5'
24018	3'	-56.8	NC_005262.1	+	12729	0.67	0.595211
	Target:  5'- cCGCgCGCGCUUCUUCUUC-ACggUGCCGa -3' miRNA:   3'- -GUGaGCGCGGAGGAGAGGaUG--AUGGC- -5'
24018	3'	-56.8	NC_005262.1	+	7698	0.67	0.584507
	Target:  5'- aGCUgCGcCGCCUCCUCgagcugcaUCUUGCgcugACCGc -3' miRNA:   3'- gUGA-GC-GCGGAGGAG--------AGGAUGa---UGGC- -5'
24018	3'	-56.8	NC_005262.1	+	10670	0.68	0.563221
	Target:  5'- cCGCUCGCGCCgcgCUgCUCCgcgguacGCUGCgGc -3' miRNA:   3'- -GUGAGCGCGGa--GGaGAGGa------UGAUGgC- -5'
24018	3'	-56.8	NC_005262.1	+	47726	0.7	0.461004
	Target:  5'- -cCUCGCGCUUCUUgUCCUccgGCaGCCGc -3' miRNA:   3'- guGAGCGCGGAGGAgAGGA---UGaUGGC- -5'
24018	3'	-56.8	NC_005262.1	+	34886	0.7	0.451304
	Target:  5'- gCGCUCGCGagcaUCCUCa--UGCUGCCGa -3' miRNA:   3'- -GUGAGCGCgg--AGGAGaggAUGAUGGC- -5'
24018	3'	-56.8	NC_005262.1	+	17406	0.73	0.296163
	Target:  5'- gCGCUCGCGCUccuugcggucugcuUCCUcCUUCUcCUGCCGa -3' miRNA:   3'- -GUGAGCGCGG--------------AGGA-GAGGAuGAUGGC- -5'
24018	3'	-56.8	NC_005262.1	+	15665	0.75	0.238313
	Target:  5'- gCGCgcgCGCGCCUCCagCUCCUcCUGCUc -3' miRNA:   3'- -GUGa--GCGCGGAGGa-GAGGAuGAUGGc -5'
24018	3'	-56.8	NC_005262.1	+	27629	1.08	0.001074
	Target:  5'- gCACUCGCGCCUCCUCUCCUACUACCGu -3' miRNA:   3'- -GUGAGCGCGGAGGAGAGGAUGAUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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