Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24018 | 3' | -56.8 | NC_005262.1 | + | 17702 | 0.66 | 0.691832 |
Target: 5'- aGCUCGCGCugcuggcgCUCCagCUCCgcgcGCUgcGCCGc -3' miRNA: 3'- gUGAGCGCG--------GAGGa-GAGGa---UGA--UGGC- -5' |
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24018 | 3' | -56.8 | NC_005262.1 | + | 59631 | 0.66 | 0.681184 |
Target: 5'- aACcucgCGCGCCagUCUCUCCUcgcGCUggucGCCGa -3' miRNA: 3'- gUGa---GCGCGGa-GGAGAGGA---UGA----UGGC- -5' |
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24018 | 3' | -56.8 | NC_005262.1 | + | 58730 | 0.67 | 0.638243 |
Target: 5'- aACUCGCGCgC-CCggccgCUCg-ACUGCCGa -3' miRNA: 3'- gUGAGCGCG-GaGGa----GAGgaUGAUGGC- -5' |
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24018 | 3' | -56.8 | NC_005262.1 | + | 12729 | 0.67 | 0.595211 |
Target: 5'- cCGCgCGCGCUUCUUCUUC-ACggUGCCGa -3' miRNA: 3'- -GUGaGCGCGGAGGAGAGGaUG--AUGGC- -5' |
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24018 | 3' | -56.8 | NC_005262.1 | + | 7698 | 0.67 | 0.584507 |
Target: 5'- aGCUgCGcCGCCUCCUCgagcugcaUCUUGCgcugACCGc -3' miRNA: 3'- gUGA-GC-GCGGAGGAG--------AGGAUGa---UGGC- -5' |
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24018 | 3' | -56.8 | NC_005262.1 | + | 10670 | 0.68 | 0.563221 |
Target: 5'- cCGCUCGCGCCgcgCUgCUCCgcgguacGCUGCgGc -3' miRNA: 3'- -GUGAGCGCGGa--GGaGAGGa------UGAUGgC- -5' |
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24018 | 3' | -56.8 | NC_005262.1 | + | 47726 | 0.7 | 0.461004 |
Target: 5'- -cCUCGCGCUUCUUgUCCUccgGCaGCCGc -3' miRNA: 3'- guGAGCGCGGAGGAgAGGA---UGaUGGC- -5' |
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24018 | 3' | -56.8 | NC_005262.1 | + | 34886 | 0.7 | 0.451304 |
Target: 5'- gCGCUCGCGagcaUCCUCa--UGCUGCCGa -3' miRNA: 3'- -GUGAGCGCgg--AGGAGaggAUGAUGGC- -5' |
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24018 | 3' | -56.8 | NC_005262.1 | + | 17406 | 0.73 | 0.296163 |
Target: 5'- gCGCUCGCGCUccuugcggucugcuUCCUcCUUCUcCUGCCGa -3' miRNA: 3'- -GUGAGCGCGG--------------AGGA-GAGGAuGAUGGC- -5' |
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24018 | 3' | -56.8 | NC_005262.1 | + | 15665 | 0.75 | 0.238313 |
Target: 5'- gCGCgcgCGCGCCUCCagCUCCUcCUGCUc -3' miRNA: 3'- -GUGa--GCGCGGAGGa-GAGGAuGAUGGc -5' |
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24018 | 3' | -56.8 | NC_005262.1 | + | 27629 | 1.08 | 0.001074 |
Target: 5'- gCACUCGCGCCUCCUCUCCUACUACCGu -3' miRNA: 3'- -GUGAGCGCGGAGGAGAGGAUGAUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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