Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24018 | 5' | -53.1 | NC_005262.1 | + | 27666 | 1.11 | 0.001588 |
Target: 5'- uCCCGACAGCAAGAUAAUCGGGCCGAGa -3' miRNA: 3'- -GGGCUGUCGUUCUAUUAGCCCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 52959 | 0.8 | 0.190842 |
Target: 5'- gCCGGCGGCAAGGUGcUCGaGCCGGGc -3' miRNA: 3'- gGGCUGUCGUUCUAUuAGCcCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 13444 | 0.77 | 0.281275 |
Target: 5'- uUCCGugcuggcGCAGCGcuucgagagGGGUGAUCGGGCCGAc -3' miRNA: 3'- -GGGC-------UGUCGU---------UCUAUUAGCCCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 44823 | 0.75 | 0.404409 |
Target: 5'- uUCGAgaAGuCGAGAUAGUCGcGGCCGAGc -3' miRNA: 3'- gGGCUg-UC-GUUCUAUUAGC-CCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 20512 | 0.73 | 0.512982 |
Target: 5'- aCCGu--GCAGGAUAGUgGGGCCGc- -3' miRNA: 3'- gGGCuguCGUUCUAUUAgCCCGGCuc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 31196 | 0.72 | 0.555423 |
Target: 5'- cCCUGugGGUuagGAGGUAggauuGUCGGGCCGcGg -3' miRNA: 3'- -GGGCugUCG---UUCUAU-----UAGCCCGGCuC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 42697 | 0.72 | 0.555423 |
Target: 5'- uUCGGCAGCGAGAUAA---GGCCGGu -3' miRNA: 3'- gGGCUGUCGUUCUAUUagcCCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 55622 | 0.71 | 0.598827 |
Target: 5'- aCCUGcGCAGCAAGAagc-CGGGCCGc- -3' miRNA: 3'- -GGGC-UGUCGUUCUauuaGCCCGGCuc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 17903 | 0.71 | 0.598827 |
Target: 5'- gCCCGAuuuaCGGCGAGccgccGAUCGGcGCCGAc -3' miRNA: 3'- -GGGCU----GUCGUUCua---UUAGCC-CGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 24930 | 0.7 | 0.675496 |
Target: 5'- aCUGGC-GCAGGGUGAUCGGcacggcGCCGGc -3' miRNA: 3'- gGGCUGuCGUUCUAUUAGCC------CGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 57289 | 0.7 | 0.642677 |
Target: 5'- gCCGAcCGGCAGGuc---CGGGUCGAGc -3' miRNA: 3'- gGGCU-GUCGUUCuauuaGCCCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 57458 | 0.7 | 0.675496 |
Target: 5'- gCCgCGGCGGCGAcGAUGgagGUCGaGGgCGAGa -3' miRNA: 3'- -GG-GCUGUCGUU-CUAU---UAGC-CCgGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 56146 | 0.7 | 0.631704 |
Target: 5'- aCCCGaACAGCAagcugaaccAGAUGAUCGacGCCGuGa -3' miRNA: 3'- -GGGC-UGUCGU---------UCUAUUAGCc-CGGCuC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 60094 | 0.7 | 0.686368 |
Target: 5'- gCUGACgGGCAcGAUcaacauGGUCGGGCaCGAGg -3' miRNA: 3'- gGGCUG-UCGUuCUA------UUAGCCCG-GCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 33904 | 0.69 | 0.739732 |
Target: 5'- gCCGGCGGCccgaucGGUAGcggCGGuGCCGAGc -3' miRNA: 3'- gGGCUGUCGuu----CUAUUa--GCC-CGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 58556 | 0.69 | 0.72923 |
Target: 5'- uCCaccaaGGCGGCGAGAagcUGAUCGGcacGCCGGc -3' miRNA: 3'- -GGg----CUGUCGUUCU---AUUAGCC---CGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 49858 | 0.69 | 0.739732 |
Target: 5'- gCgCGGCAGCGgccGGAgccUCGGGCgCGGGc -3' miRNA: 3'- -GgGCUGUCGU---UCUauuAGCCCG-GCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 28903 | 0.69 | 0.707946 |
Target: 5'- gCgCGACgcgAGCucGAGAUGcgCGGGCgCGAGg -3' miRNA: 3'- -GgGCUG---UCG--UUCUAUuaGCCCG-GCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 28014 | 0.69 | 0.72923 |
Target: 5'- -aCGACGGCGAGccGAUCuacgcgGGcGCCGAGa -3' miRNA: 3'- ggGCUGUCGUUCuaUUAG------CC-CGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 17829 | 0.69 | 0.707946 |
Target: 5'- cCCCGGCaacuGGCGAGAUGGaaaCGcGGCCGu- -3' miRNA: 3'- -GGGCUG----UCGUUCUAUUa--GC-CCGGCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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