Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24018 | 5' | -53.1 | NC_005262.1 | + | 49858 | 0.69 | 0.739732 |
Target: 5'- gCgCGGCAGCGgccGGAgccUCGGGCgCGGGc -3' miRNA: 3'- -GgGCUGUCGU---UCUauuAGCCCG-GCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 30572 | 0.68 | 0.750127 |
Target: 5'- gCCUGAC-GCAGGAUu-UCGGcGCCGu- -3' miRNA: 3'- -GGGCUGuCGUUCUAuuAGCC-CGGCuc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 50229 | 0.68 | 0.790399 |
Target: 5'- aCCGAacgccGCAAGGU-GUCGG-CCGAGa -3' miRNA: 3'- gGGCUgu---CGUUCUAuUAGCCcGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 4862 | 0.68 | 0.790399 |
Target: 5'- uCCCGACAuGCGAGAggcugagcucagUGAUCcguGGcGCCGGc -3' miRNA: 3'- -GGGCUGU-CGUUCU------------AUUAG---CC-CGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 15054 | 0.67 | 0.797197 |
Target: 5'- gCCCGAguucgAGCAGGcAUGGucgcuguacccgccUCGGGCCGGa -3' miRNA: 3'- -GGGCUg----UCGUUC-UAUU--------------AGCCCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 33573 | 0.67 | 0.800085 |
Target: 5'- gCUCGAggcCGGCGAGAUcacGAUCGaGGCCa-- -3' miRNA: 3'- -GGGCU---GUCGUUCUA---UUAGC-CCGGcuc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 57758 | 0.67 | 0.800085 |
Target: 5'- gCCCGGCGcGCGAGAagucGAUCGugccGCCGAu -3' miRNA: 3'- -GGGCUGU-CGUUCUa---UUAGCc---CGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 22340 | 0.67 | 0.809596 |
Target: 5'- -gCGACGGCGuGAUGcgCaGGCCGGc -3' miRNA: 3'- ggGCUGUCGUuCUAUuaGcCCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 26355 | 0.67 | 0.83698 |
Target: 5'- gUCCGcgucguGCGGCAGGAacAUCGugucccacacgaGGCCGAGc -3' miRNA: 3'- -GGGC------UGUCGUUCUauUAGC------------CCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 30335 | 0.67 | 0.845692 |
Target: 5'- gCCaGCAGCAGGAaaugAAUgCGuGGCUGGGg -3' miRNA: 3'- gGGcUGUCGUUCUa---UUA-GC-CCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 2735 | 0.67 | 0.845692 |
Target: 5'- gCCCGGCGccgcGCAGGca---UGGGCCGAu -3' miRNA: 3'- -GGGCUGU----CGUUCuauuaGCCCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 53853 | 0.66 | 0.854181 |
Target: 5'- gCgGACGGCAAGcaGAUCGcgcucaagccGGCCGAc -3' miRNA: 3'- gGgCUGUCGUUCuaUUAGC----------CCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 48438 | 0.66 | 0.86244 |
Target: 5'- gCCGcCAGCAgcgccGGGUcGGUCGuGCCGAGc -3' miRNA: 3'- gGGCuGUCGU-----UCUA-UUAGCcCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 25925 | 0.66 | 0.869668 |
Target: 5'- gCCGGuccuucuCGGUGAuGAUGAcgUGGGCCGAGu -3' miRNA: 3'- gGGCU-------GUCGUU-CUAUUa-GCCCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 17062 | 0.66 | 0.870459 |
Target: 5'- -gCGGCAGCAGGGcaauAUCGGuGCCcGGc -3' miRNA: 3'- ggGCUGUCGUUCUau--UAGCC-CGGcUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 30928 | 0.66 | 0.870459 |
Target: 5'- uCCCGACGuCGAcGAUGcgCGucGCCGAGa -3' miRNA: 3'- -GGGCUGUcGUU-CUAUuaGCc-CGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 4680 | 0.66 | 0.870459 |
Target: 5'- gCCG-CGGCcGGA---UCGGGCCGcGg -3' miRNA: 3'- gGGCuGUCGuUCUauuAGCCCGGCuC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 50659 | 0.66 | 0.870459 |
Target: 5'- -gCGGCAGCGGGc---UCGGGCUGcGg -3' miRNA: 3'- ggGCUGUCGUUCuauuAGCCCGGCuC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 63388 | 0.66 | 0.875926 |
Target: 5'- uUCCGacGCAGCAacAGAggcGUCGGagaaggcccgcaaaGCCGAGg -3' miRNA: 3'- -GGGC--UGUCGU--UCUau-UAGCC--------------CGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 4982 | 0.66 | 0.878232 |
Target: 5'- gCCCGACgucacgccgaAGCAGGucgAGUCGGcGCuCGGc -3' miRNA: 3'- -GGGCUG----------UCGUUCua-UUAGCC-CG-GCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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