miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24018 5' -53.1 NC_005262.1 + 2735 0.67 0.845692
Target:  5'- gCCCGGCGccgcGCAGGca---UGGGCCGAu -3'
miRNA:   3'- -GGGCUGU----CGUUCuauuaGCCCGGCUc -5'
24018 5' -53.1 NC_005262.1 + 4680 0.66 0.870459
Target:  5'- gCCG-CGGCcGGA---UCGGGCCGcGg -3'
miRNA:   3'- gGGCuGUCGuUCUauuAGCCCGGCuC- -5'
24018 5' -53.1 NC_005262.1 + 4862 0.68 0.790399
Target:  5'- uCCCGACAuGCGAGAggcugagcucagUGAUCcguGGcGCCGGc -3'
miRNA:   3'- -GGGCUGU-CGUUCU------------AUUAG---CC-CGGCUc -5'
24018 5' -53.1 NC_005262.1 + 4982 0.66 0.878232
Target:  5'- gCCCGACgucacgccgaAGCAGGucgAGUCGGcGCuCGGc -3'
miRNA:   3'- -GGGCUG----------UCGUUCua-UUAGCC-CG-GCUc -5'
24018 5' -53.1 NC_005262.1 + 13444 0.77 0.281275
Target:  5'- uUCCGugcuggcGCAGCGcuucgagagGGGUGAUCGGGCCGAc -3'
miRNA:   3'- -GGGC-------UGUCGU---------UCUAUUAGCCCGGCUc -5'
24018 5' -53.1 NC_005262.1 + 15054 0.67 0.797197
Target:  5'- gCCCGAguucgAGCAGGcAUGGucgcuguacccgccUCGGGCCGGa -3'
miRNA:   3'- -GGGCUg----UCGUUC-UAUU--------------AGCCCGGCUc -5'
24018 5' -53.1 NC_005262.1 + 16482 0.66 0.885754
Target:  5'- uCCCGGCGGCcGGc----CGGGgCGGGu -3'
miRNA:   3'- -GGGCUGUCGuUCuauuaGCCCgGCUC- -5'
24018 5' -53.1 NC_005262.1 + 17062 0.66 0.870459
Target:  5'- -gCGGCAGCAGGGcaauAUCGGuGCCcGGc -3'
miRNA:   3'- ggGCUGUCGUUCUau--UAGCC-CGGcUC- -5'
24018 5' -53.1 NC_005262.1 + 17829 0.69 0.707946
Target:  5'- cCCCGGCaacuGGCGAGAUGGaaaCGcGGCCGu- -3'
miRNA:   3'- -GGGCUG----UCGUUCUAUUa--GC-CCGGCuc -5'
24018 5' -53.1 NC_005262.1 + 17903 0.71 0.598827
Target:  5'- gCCCGAuuuaCGGCGAGccgccGAUCGGcGCCGAc -3'
miRNA:   3'- -GGGCU----GUCGUUCua---UUAGCC-CGGCUc -5'
24018 5' -53.1 NC_005262.1 + 20512 0.73 0.512982
Target:  5'- aCCGu--GCAGGAUAGUgGGGCCGc- -3'
miRNA:   3'- gGGCuguCGUUCUAUUAgCCCGGCuc -5'
24018 5' -53.1 NC_005262.1 + 22340 0.67 0.809596
Target:  5'- -gCGACGGCGuGAUGcgCaGGCCGGc -3'
miRNA:   3'- ggGCUGUCGUuCUAUuaGcCCGGCUc -5'
24018 5' -53.1 NC_005262.1 + 24930 0.7 0.675496
Target:  5'- aCUGGC-GCAGGGUGAUCGGcacggcGCCGGc -3'
miRNA:   3'- gGGCUGuCGUUCUAUUAGCC------CGGCUc -5'
24018 5' -53.1 NC_005262.1 + 25925 0.66 0.869668
Target:  5'- gCCGGuccuucuCGGUGAuGAUGAcgUGGGCCGAGu -3'
miRNA:   3'- gGGCU-------GUCGUU-CUAUUa-GCCCGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 26355 0.67 0.83698
Target:  5'- gUCCGcgucguGCGGCAGGAacAUCGugucccacacgaGGCCGAGc -3'
miRNA:   3'- -GGGC------UGUCGUUCUauUAGC------------CCGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 27666 1.11 0.001588
Target:  5'- uCCCGACAGCAAGAUAAUCGGGCCGAGa -3'
miRNA:   3'- -GGGCUGUCGUUCUAUUAGCCCGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 28014 0.69 0.72923
Target:  5'- -aCGACGGCGAGccGAUCuacgcgGGcGCCGAGa -3'
miRNA:   3'- ggGCUGUCGUUCuaUUAG------CC-CGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 28401 0.69 0.72923
Target:  5'- aCCCGaacgacgaGCGGCAcgugcucgAGGUcgAAUCGGGCCGc- -3'
miRNA:   3'- -GGGC--------UGUCGU--------UCUA--UUAGCCCGGCuc -5'
24018 5' -53.1 NC_005262.1 + 28903 0.69 0.707946
Target:  5'- gCgCGACgcgAGCucGAGAUGcgCGGGCgCGAGg -3'
miRNA:   3'- -GgGCUG---UCG--UUCUAUuaGCCCG-GCUC- -5'
24018 5' -53.1 NC_005262.1 + 30335 0.67 0.845692
Target:  5'- gCCaGCAGCAGGAaaugAAUgCGuGGCUGGGg -3'
miRNA:   3'- gGGcUGUCGUUCUa---UUA-GC-CCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.