Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24018 | 5' | -53.1 | NC_005262.1 | + | 63388 | 0.66 | 0.875926 |
Target: 5'- uUCCGacGCAGCAacAGAggcGUCGGagaaggcccgcaaaGCCGAGg -3' miRNA: 3'- -GGGC--UGUCGU--UCUau-UAGCC--------------CGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 60094 | 0.7 | 0.686368 |
Target: 5'- gCUGACgGGCAcGAUcaacauGGUCGGGCaCGAGg -3' miRNA: 3'- gGGCUG-UCGUuCUA------UUAGCCCG-GCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 58556 | 0.69 | 0.72923 |
Target: 5'- uCCaccaaGGCGGCGAGAagcUGAUCGGcacGCCGGc -3' miRNA: 3'- -GGg----CUGUCGUUCU---AUUAGCC---CGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 57758 | 0.67 | 0.800085 |
Target: 5'- gCCCGGCGcGCGAGAagucGAUCGugccGCCGAu -3' miRNA: 3'- -GGGCUGU-CGUUCUa---UUAGCc---CGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 57458 | 0.7 | 0.675496 |
Target: 5'- gCCgCGGCGGCGAcGAUGgagGUCGaGGgCGAGa -3' miRNA: 3'- -GG-GCUGUCGUU-CUAU---UAGC-CCgGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 57289 | 0.7 | 0.642677 |
Target: 5'- gCCGAcCGGCAGGuc---CGGGUCGAGc -3' miRNA: 3'- gGGCU-GUCGUUCuauuaGCCCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 56146 | 0.7 | 0.631704 |
Target: 5'- aCCCGaACAGCAagcugaaccAGAUGAUCGacGCCGuGa -3' miRNA: 3'- -GGGC-UGUCGU---------UCUAUUAGCc-CGGCuC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 55622 | 0.71 | 0.598827 |
Target: 5'- aCCUGcGCAGCAAGAagc-CGGGCCGc- -3' miRNA: 3'- -GGGC-UGUCGUUCUauuaGCCCGGCuc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 53853 | 0.66 | 0.854181 |
Target: 5'- gCgGACGGCAAGcaGAUCGcgcucaagccGGCCGAc -3' miRNA: 3'- gGgCUGUCGUUCuaUUAGC----------CCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 52959 | 0.8 | 0.190842 |
Target: 5'- gCCGGCGGCAAGGUGcUCGaGCCGGGc -3' miRNA: 3'- gGGCUGUCGUUCUAUuAGCcCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 50659 | 0.66 | 0.870459 |
Target: 5'- -gCGGCAGCGGGc---UCGGGCUGcGg -3' miRNA: 3'- ggGCUGUCGUUCuauuAGCCCGGCuC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 50229 | 0.68 | 0.790399 |
Target: 5'- aCCGAacgccGCAAGGU-GUCGG-CCGAGa -3' miRNA: 3'- gGGCUgu---CGUUCUAuUAGCCcGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 49858 | 0.69 | 0.739732 |
Target: 5'- gCgCGGCAGCGgccGGAgccUCGGGCgCGGGc -3' miRNA: 3'- -GgGCUGUCGU---UCUauuAGCCCG-GCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 48438 | 0.66 | 0.86244 |
Target: 5'- gCCGcCAGCAgcgccGGGUcGGUCGuGCCGAGc -3' miRNA: 3'- gGGCuGUCGU-----UCUA-UUAGCcCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 44823 | 0.75 | 0.404409 |
Target: 5'- uUCGAgaAGuCGAGAUAGUCGcGGCCGAGc -3' miRNA: 3'- gGGCUg-UC-GUUCUAUUAGC-CCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 42697 | 0.72 | 0.555423 |
Target: 5'- uUCGGCAGCGAGAUAA---GGCCGGu -3' miRNA: 3'- gGGCUGUCGUUCUAUUagcCCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 33904 | 0.69 | 0.739732 |
Target: 5'- gCCGGCGGCccgaucGGUAGcggCGGuGCCGAGc -3' miRNA: 3'- gGGCUGUCGuu----CUAUUa--GCC-CGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 33573 | 0.67 | 0.800085 |
Target: 5'- gCUCGAggcCGGCGAGAUcacGAUCGaGGCCa-- -3' miRNA: 3'- -GGGCU---GUCGUUCUA---UUAGC-CCGGcuc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 31196 | 0.72 | 0.555423 |
Target: 5'- cCCUGugGGUuagGAGGUAggauuGUCGGGCCGcGg -3' miRNA: 3'- -GGGCugUCG---UUCUAU-----UAGCCCGGCuC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 30928 | 0.66 | 0.870459 |
Target: 5'- uCCCGACGuCGAcGAUGcgCGucGCCGAGa -3' miRNA: 3'- -GGGCUGUcGUU-CUAUuaGCc-CGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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