miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24018 5' -53.1 NC_005262.1 + 27666 1.11 0.001588
Target:  5'- uCCCGACAGCAAGAUAAUCGGGCCGAGa -3'
miRNA:   3'- -GGGCUGUCGUUCUAUUAGCCCGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 33904 0.69 0.739732
Target:  5'- gCCGGCGGCccgaucGGUAGcggCGGuGCCGAGc -3'
miRNA:   3'- gGGCUGUCGuu----CUAUUa--GCC-CGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 50229 0.68 0.790399
Target:  5'- aCCGAacgccGCAAGGU-GUCGG-CCGAGa -3'
miRNA:   3'- gGGCUgu---CGUUCUAuUAGCCcGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 15054 0.67 0.797197
Target:  5'- gCCCGAguucgAGCAGGcAUGGucgcuguacccgccUCGGGCCGGa -3'
miRNA:   3'- -GGGCUg----UCGUUC-UAUU--------------AGCCCGGCUc -5'
24018 5' -53.1 NC_005262.1 + 33573 0.67 0.800085
Target:  5'- gCUCGAggcCGGCGAGAUcacGAUCGaGGCCa-- -3'
miRNA:   3'- -GGGCU---GUCGUUCUA---UUAGC-CCGGcuc -5'
24018 5' -53.1 NC_005262.1 + 30335 0.67 0.845692
Target:  5'- gCCaGCAGCAGGAaaugAAUgCGuGGCUGGGg -3'
miRNA:   3'- gGGcUGUCGUUCUa---UUA-GC-CCGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 53853 0.66 0.854181
Target:  5'- gCgGACGGCAAGcaGAUCGcgcucaagccGGCCGAc -3'
miRNA:   3'- gGgCUGUCGUUCuaUUAGC----------CCGGCUc -5'
24018 5' -53.1 NC_005262.1 + 4680 0.66 0.870459
Target:  5'- gCCG-CGGCcGGA---UCGGGCCGcGg -3'
miRNA:   3'- gGGCuGUCGuUCUauuAGCCCGGCuC- -5'
24018 5' -53.1 NC_005262.1 + 63388 0.66 0.875926
Target:  5'- uUCCGacGCAGCAacAGAggcGUCGGagaaggcccgcaaaGCCGAGg -3'
miRNA:   3'- -GGGC--UGUCGU--UCUau-UAGCC--------------CGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 28401 0.69 0.72923
Target:  5'- aCCCGaacgacgaGCGGCAcgugcucgAGGUcgAAUCGGGCCGc- -3'
miRNA:   3'- -GGGC--------UGUCGU--------UCUA--UUAGCCCGGCuc -5'
24018 5' -53.1 NC_005262.1 + 58556 0.69 0.72923
Target:  5'- uCCaccaaGGCGGCGAGAagcUGAUCGGcacGCCGGc -3'
miRNA:   3'- -GGg----CUGUCGUUCU---AUUAGCC---CGGCUc -5'
24018 5' -53.1 NC_005262.1 + 52959 0.8 0.190842
Target:  5'- gCCGGCGGCAAGGUGcUCGaGCCGGGc -3'
miRNA:   3'- gGGCUGUCGUUCUAUuAGCcCGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 55622 0.71 0.598827
Target:  5'- aCCUGcGCAGCAAGAagc-CGGGCCGc- -3'
miRNA:   3'- -GGGC-UGUCGUUCUauuaGCCCGGCuc -5'
24018 5' -53.1 NC_005262.1 + 17903 0.71 0.598827
Target:  5'- gCCCGAuuuaCGGCGAGccgccGAUCGGcGCCGAc -3'
miRNA:   3'- -GGGCU----GUCGUUCua---UUAGCC-CGGCUc -5'
24018 5' -53.1 NC_005262.1 + 56146 0.7 0.631704
Target:  5'- aCCCGaACAGCAagcugaaccAGAUGAUCGacGCCGuGa -3'
miRNA:   3'- -GGGC-UGUCGU---------UCUAUUAGCc-CGGCuC- -5'
24018 5' -53.1 NC_005262.1 + 57458 0.7 0.675496
Target:  5'- gCCgCGGCGGCGAcGAUGgagGUCGaGGgCGAGa -3'
miRNA:   3'- -GG-GCUGUCGUU-CUAU---UAGC-CCgGCUC- -5'
24018 5' -53.1 NC_005262.1 + 60094 0.7 0.686368
Target:  5'- gCUGACgGGCAcGAUcaacauGGUCGGGCaCGAGg -3'
miRNA:   3'- gGGCUG-UCGUuCUA------UUAGCCCG-GCUC- -5'
24018 5' -53.1 NC_005262.1 + 17829 0.69 0.707946
Target:  5'- cCCCGGCaacuGGCGAGAUGGaaaCGcGGCCGu- -3'
miRNA:   3'- -GGGCUG----UCGUUCUAUUa--GC-CCGGCuc -5'
24018 5' -53.1 NC_005262.1 + 28014 0.69 0.72923
Target:  5'- -aCGACGGCGAGccGAUCuacgcgGGcGCCGAGa -3'
miRNA:   3'- ggGCUGUCGUUCuaUUAG------CC-CGGCUC- -5'
24018 5' -53.1 NC_005262.1 + 13444 0.77 0.281275
Target:  5'- uUCCGugcuggcGCAGCGcuucgagagGGGUGAUCGGGCCGAc -3'
miRNA:   3'- -GGGC-------UGUCGU---------UCUAUUAGCCCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.