Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24018 | 5' | -53.1 | NC_005262.1 | + | 50659 | 0.66 | 0.870459 |
Target: 5'- -gCGGCAGCGGGc---UCGGGCUGcGg -3' miRNA: 3'- ggGCUGUCGUUCuauuAGCCCGGCuC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 31196 | 0.72 | 0.555423 |
Target: 5'- cCCUGugGGUuagGAGGUAggauuGUCGGGCCGcGg -3' miRNA: 3'- -GGGCugUCG---UUCUAU-----UAGCCCGGCuC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 20512 | 0.73 | 0.512982 |
Target: 5'- aCCGu--GCAGGAUAGUgGGGCCGc- -3' miRNA: 3'- gGGCuguCGUUCUAUUAgCCCGGCuc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 13444 | 0.77 | 0.281275 |
Target: 5'- uUCCGugcuggcGCAGCGcuucgagagGGGUGAUCGGGCCGAc -3' miRNA: 3'- -GGGC-------UGUCGU---------UCUAUUAGCCCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 48438 | 0.66 | 0.86244 |
Target: 5'- gCCGcCAGCAgcgccGGGUcGGUCGuGCCGAGc -3' miRNA: 3'- gGGCuGUCGU-----UCUA-UUAGCcCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 2735 | 0.67 | 0.845692 |
Target: 5'- gCCCGGCGccgcGCAGGca---UGGGCCGAu -3' miRNA: 3'- -GGGCUGU----CGUUCuauuaGCCCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 22340 | 0.67 | 0.809596 |
Target: 5'- -gCGACGGCGuGAUGcgCaGGCCGGc -3' miRNA: 3'- ggGCUGUCGUuCUAUuaGcCCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 57758 | 0.67 | 0.800085 |
Target: 5'- gCCCGGCGcGCGAGAagucGAUCGugccGCCGAu -3' miRNA: 3'- -GGGCUGU-CGUUCUa---UUAGCc---CGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 16482 | 0.66 | 0.885754 |
Target: 5'- uCCCGGCGGCcGGc----CGGGgCGGGu -3' miRNA: 3'- -GGGCUGUCGuUCuauuaGCCCgGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 57289 | 0.7 | 0.642677 |
Target: 5'- gCCGAcCGGCAGGuc---CGGGUCGAGc -3' miRNA: 3'- gGGCU-GUCGUUCuauuaGCCCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 49858 | 0.69 | 0.739732 |
Target: 5'- gCgCGGCAGCGgccGGAgccUCGGGCgCGGGc -3' miRNA: 3'- -GgGCUGUCGU---UCUauuAGCCCG-GCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 30572 | 0.68 | 0.750127 |
Target: 5'- gCCUGAC-GCAGGAUu-UCGGcGCCGu- -3' miRNA: 3'- -GGGCUGuCGUUCUAuuAGCC-CGGCuc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 30928 | 0.66 | 0.870459 |
Target: 5'- uCCCGACGuCGAcGAUGcgCGucGCCGAGa -3' miRNA: 3'- -GGGCUGUcGUU-CUAUuaGCc-CGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 28903 | 0.69 | 0.707946 |
Target: 5'- gCgCGACgcgAGCucGAGAUGcgCGGGCgCGAGg -3' miRNA: 3'- -GgGCUG---UCG--UUCUAUuaGCCCG-GCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 17062 | 0.66 | 0.870459 |
Target: 5'- -gCGGCAGCAGGGcaauAUCGGuGCCcGGc -3' miRNA: 3'- ggGCUGUCGUUCUau--UAGCC-CGGcUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 4862 | 0.68 | 0.790399 |
Target: 5'- uCCCGACAuGCGAGAggcugagcucagUGAUCcguGGcGCCGGc -3' miRNA: 3'- -GGGCUGU-CGUUCU------------AUUAG---CC-CGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 24930 | 0.7 | 0.675496 |
Target: 5'- aCUGGC-GCAGGGUGAUCGGcacggcGCCGGc -3' miRNA: 3'- gGGCUGuCGUUCUAUUAGCC------CGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 42697 | 0.72 | 0.555423 |
Target: 5'- uUCGGCAGCGAGAUAA---GGCCGGu -3' miRNA: 3'- gGGCUGUCGUUCUAUUagcCCGGCUc -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 25925 | 0.66 | 0.869668 |
Target: 5'- gCCGGuccuucuCGGUGAuGAUGAcgUGGGCCGAGu -3' miRNA: 3'- gGGCU-------GUCGUU-CUAUUa-GCCCGGCUC- -5' |
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24018 | 5' | -53.1 | NC_005262.1 | + | 26355 | 0.67 | 0.83698 |
Target: 5'- gUCCGcgucguGCGGCAGGAacAUCGugucccacacgaGGCCGAGc -3' miRNA: 3'- -GGGC------UGUCGUUCUauUAGC------------CCGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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