miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24019 3' -52.3 NC_005262.1 + 25394 0.66 0.918464
Target:  5'- aGAUGAgGGUCGuaaagcCGAGCUGgcGG-GCc -3'
miRNA:   3'- cCUGCU-CUAGCu-----GCUCGACuuCCuCG- -5'
24019 3' -52.3 NC_005262.1 + 50754 0.66 0.912226
Target:  5'- -cACGAGAUCgugcaGACGGGC--AAGGuGCg -3'
miRNA:   3'- ccUGCUCUAG-----CUGCUCGacUUCCuCG- -5'
24019 3' -52.3 NC_005262.1 + 55329 0.66 0.912226
Target:  5'- cGACcAGAUCGACGAGUgGAA--AGCc -3'
miRNA:   3'- cCUGcUCUAGCUGCUCGaCUUccUCG- -5'
24019 3' -52.3 NC_005262.1 + 62164 0.66 0.905716
Target:  5'- -cACGAGGUaGuCGAGCUGGAGcaucAGCg -3'
miRNA:   3'- ccUGCUCUAgCuGCUCGACUUCc---UCG- -5'
24019 3' -52.3 NC_005262.1 + 41127 0.66 0.905716
Target:  5'- aGGAUGGGGaacaucucgcccUCucCGGGCUGAAGcGAGa -3'
miRNA:   3'- -CCUGCUCU------------AGcuGCUCGACUUC-CUCg -5'
24019 3' -52.3 NC_005262.1 + 61643 0.66 0.899625
Target:  5'- aGGGCGAgGAggaagugcuguaccgCGGCGcGCUGGAGGcGUu -3'
miRNA:   3'- -CCUGCU-CUa--------------GCUGCuCGACUUCCuCG- -5'
24019 3' -52.3 NC_005262.1 + 16631 0.66 0.898935
Target:  5'- uGGGCGAuAUCGuCGuGCUGcgcGAGCa -3'
miRNA:   3'- -CCUGCUcUAGCuGCuCGACuucCUCG- -5'
24019 3' -52.3 NC_005262.1 + 63077 0.66 0.898935
Target:  5'- cGGGCGAGuaugCGGCG-GCgUGcAAGGcGCu -3'
miRNA:   3'- -CCUGCUCua--GCUGCuCG-AC-UUCCuCG- -5'
24019 3' -52.3 NC_005262.1 + 46692 0.66 0.898935
Target:  5'- cGGGCGGGAUCuguGGCGucuGCggcGAGGAcgGCg -3'
miRNA:   3'- -CCUGCUCUAG---CUGCu--CGac-UUCCU--CG- -5'
24019 3' -52.3 NC_005262.1 + 33822 0.66 0.896848
Target:  5'- aGGACGAGGaucacauUCGcugggaggucccCGAGCUGAucGAGUg -3'
miRNA:   3'- -CCUGCUCU-------AGCu-----------GCUCGACUucCUCG- -5'
24019 3' -52.3 NC_005262.1 + 50248 0.66 0.891887
Target:  5'- cGGcCGAGAUCGACcgccGCaacGAGGGcGCg -3'
miRNA:   3'- -CCuGCUCUAGCUGcu--CGa--CUUCCuCG- -5'
24019 3' -52.3 NC_005262.1 + 52817 0.66 0.891887
Target:  5'- aGugGcAGGcgcUCGGCGAgcgGCUGAAGGcuGCg -3'
miRNA:   3'- cCugC-UCU---AGCUGCU---CGACUUCCu-CG- -5'
24019 3' -52.3 NC_005262.1 + 29400 0.67 0.884577
Target:  5'- cGACGcgcucgcGAUCG-CGAcGCUcGAGGAGCa -3'
miRNA:   3'- cCUGCu------CUAGCuGCU-CGAcUUCCUCG- -5'
24019 3' -52.3 NC_005262.1 + 14306 0.67 0.884577
Target:  5'- uGGACGGGAgggCGGCGgaaccgccgAGCUG-GGcGGCg -3'
miRNA:   3'- -CCUGCUCUa--GCUGC---------UCGACuUCcUCG- -5'
24019 3' -52.3 NC_005262.1 + 37726 0.67 0.884577
Target:  5'- gGGGCGuGAagGGCuGcGCgucGAAGGGGCa -3'
miRNA:   3'- -CCUGCuCUagCUG-CuCGa--CUUCCUCG- -5'
24019 3' -52.3 NC_005262.1 + 45873 0.67 0.884577
Target:  5'- cGGACGGcaucacgcucguGAUCcGCGGGCaGAAGGAu- -3'
miRNA:   3'- -CCUGCU------------CUAGcUGCUCGaCUUCCUcg -5'
24019 3' -52.3 NC_005262.1 + 58806 0.67 0.884577
Target:  5'- cGACGuGAUCGGCGccgUGAAGGcauGGCu -3'
miRNA:   3'- cCUGCuCUAGCUGCucgACUUCC---UCG- -5'
24019 3' -52.3 NC_005262.1 + 18124 0.67 0.87701
Target:  5'- gGGAgGGuAUCGACGAagcGCUGcgccucaaccGGGAGCg -3'
miRNA:   3'- -CCUgCUcUAGCUGCU---CGACu---------UCCUCG- -5'
24019 3' -52.3 NC_005262.1 + 22931 0.67 0.869191
Target:  5'- uGGCGAGAUagcCGACGAGCgccuucgccgcGAAguagucgcGGAGCc -3'
miRNA:   3'- cCUGCUCUA---GCUGCUCGa----------CUU--------CCUCG- -5'
24019 3' -52.3 NC_005262.1 + 8224 0.67 0.861127
Target:  5'- cGGGCcauGAGcuGUCGGCGaAGCUcGAAGccGAGCg -3'
miRNA:   3'- -CCUG---CUC--UAGCUGC-UCGA-CUUC--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.