miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24019 5' -52.5 NC_005262.1 + 34629 0.66 0.907159
Target:  5'- uCGCCGAgcuggaacgugUCGUCaaaacgccACAgccGCGUCGUCUCg -3'
miRNA:   3'- cGCGGCU-----------GGCAGa-------UGU---UGCAGUAGAG- -5'
24019 5' -52.5 NC_005262.1 + 33307 0.66 0.907159
Target:  5'- gGCGCCGaaGCCGUCgagucggACGcaacuGCGUCG-CUg -3'
miRNA:   3'- -CGCGGC--UGGCAGa------UGU-----UGCAGUaGAg -5'
24019 5' -52.5 NC_005262.1 + 53457 0.66 0.906497
Target:  5'- gGCGCCGG-CGUCgaggACAACGgCGUgaaguggCUCg -3'
miRNA:   3'- -CGCGGCUgGCAGa---UGUUGCaGUA-------GAG- -5'
24019 5' -52.5 NC_005262.1 + 10747 0.66 0.900413
Target:  5'- -gGCCuGCuCGUUUGCGAUGUCgAUUUCa -3'
miRNA:   3'- cgCGGcUG-GCAGAUGUUGCAG-UAGAG- -5'
24019 5' -52.5 NC_005262.1 + 50959 0.66 0.900413
Target:  5'- cGCGCCGugCGaUUGCGucggcaccuGCGgCAUUUCu -3'
miRNA:   3'- -CGCGGCugGCaGAUGU---------UGCaGUAGAG- -5'
24019 5' -52.5 NC_005262.1 + 34159 0.66 0.900413
Target:  5'- cCGCCGGCCGUCgccgGCAcgaAgGUCGa--- -3'
miRNA:   3'- cGCGGCUGGCAGa---UGU---UgCAGUagag -5'
24019 5' -52.5 NC_005262.1 + 31484 0.66 0.900413
Target:  5'- cCGCCGACC-UCgccguCGACGUCcgCa- -3'
miRNA:   3'- cGCGGCUGGcAGau---GUUGCAGuaGag -5'
24019 5' -52.5 NC_005262.1 + 26487 0.66 0.89411
Target:  5'- cGCGUCG-CgCGUCUGCuggaugccccaauucACGUCAUCg- -3'
miRNA:   3'- -CGCGGCuG-GCAGAUGu--------------UGCAGUAGag -5'
24019 5' -52.5 NC_005262.1 + 38824 0.66 0.893396
Target:  5'- aCGCUGACCGUCUc--GCGUg--CUCa -3'
miRNA:   3'- cGCGGCUGGCAGAuguUGCAguaGAG- -5'
24019 5' -52.5 NC_005262.1 + 53593 0.66 0.893396
Target:  5'- uGgGCCGGCCc-CUGCGGCGUCugcaCUUc -3'
miRNA:   3'- -CgCGGCUGGcaGAUGUUGCAGua--GAG- -5'
24019 5' -52.5 NC_005262.1 + 48443 0.66 0.886115
Target:  5'- -aGCCGGCCGcCaGCAGCGcCGggUCg -3'
miRNA:   3'- cgCGGCUGGCaGaUGUUGCaGUagAG- -5'
24019 5' -52.5 NC_005262.1 + 12447 0.66 0.886115
Target:  5'- gGCGCaCGAuccUCGUCga-GACGUCG-CUCa -3'
miRNA:   3'- -CGCG-GCU---GGCAGaugUUGCAGUaGAG- -5'
24019 5' -52.5 NC_005262.1 + 42200 0.66 0.886115
Target:  5'- cGCGCCGAagaugaUCGUCggcggcACGACGUacCcgCUCg -3'
miRNA:   3'- -CGCGGCU------GGCAGa-----UGUUGCA--GuaGAG- -5'
24019 5' -52.5 NC_005262.1 + 60999 0.66 0.886115
Target:  5'- cGUGCCGACCGUCauCAAg--CcgCUCg -3'
miRNA:   3'- -CGCGGCUGGCAGauGUUgcaGuaGAG- -5'
24019 5' -52.5 NC_005262.1 + 6584 0.66 0.885372
Target:  5'- cGCGCUGAUCGUCgagcggguUGCGaacuucugggcccGCGUCgaugccggcGUCUCg -3'
miRNA:   3'- -CGCGGCUGGCAG--------AUGU-------------UGCAG---------UAGAG- -5'
24019 5' -52.5 NC_005262.1 + 17929 0.66 0.878573
Target:  5'- gGCGCCGA-CGcCaACGGCGagcaggucgcgaUCGUCUCg -3'
miRNA:   3'- -CGCGGCUgGCaGaUGUUGC------------AGUAGAG- -5'
24019 5' -52.5 NC_005262.1 + 51430 0.67 0.870777
Target:  5'- cGCGCgCGAgggcgauaCCGUC-ACGACGUCcgCa- -3'
miRNA:   3'- -CGCG-GCU--------GGCAGaUGUUGCAGuaGag -5'
24019 5' -52.5 NC_005262.1 + 2229 0.67 0.870777
Target:  5'- uGCGCUGACCGaugC-ACAACG-CAgaacgCUCc -3'
miRNA:   3'- -CGCGGCUGGCa--GaUGUUGCaGUa----GAG- -5'
24019 5' -52.5 NC_005262.1 + 21503 0.67 0.865979
Target:  5'- aCGUCGGCCGUCgcgagcucggaccagUGCcgcaaGACGUCAUCc- -3'
miRNA:   3'- cGCGGCUGGCAG---------------AUG-----UUGCAGUAGag -5'
24019 5' -52.5 NC_005262.1 + 55811 0.67 0.862732
Target:  5'- cCGCCGGCgG-CUACGAgGUCGUg-- -3'
miRNA:   3'- cGCGGCUGgCaGAUGUUgCAGUAgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.