miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24019 5' -52.5 NC_005262.1 + 27770 1.13 0.001452
Target:  5'- gGCGCCGACCGUCUACAACGUCAUCUCg -3'
miRNA:   3'- -CGCGGCUGGCAGAUGUUGCAGUAGAG- -5'
24019 5' -52.5 NC_005262.1 + 49055 0.76 0.367143
Target:  5'- aGCGCCGcCUGcaUCUGCGGCGUCAUgCUg -3'
miRNA:   3'- -CGCGGCuGGC--AGAUGUUGCAGUA-GAg -5'
24019 5' -52.5 NC_005262.1 + 54854 0.75 0.419772
Target:  5'- cGCGCCGACCGgcucgucaacuaCUACAACGagAaCUCa -3'
miRNA:   3'- -CGCGGCUGGCa-----------GAUGUUGCagUaGAG- -5'
24019 5' -52.5 NC_005262.1 + 32799 0.75 0.421667
Target:  5'- cGCGCCGGCCaUCgcguuCGACGUCGgcCUCa -3'
miRNA:   3'- -CGCGGCUGGcAGau---GUUGCAGUa-GAG- -5'
24019 5' -52.5 NC_005262.1 + 23918 0.74 0.470645
Target:  5'- cGUGCCGGCCuacguugccgaGUacCUGC-GCGUCGUCUCg -3'
miRNA:   3'- -CGCGGCUGG-----------CA--GAUGuUGCAGUAGAG- -5'
24019 5' -52.5 NC_005262.1 + 35707 0.74 0.480787
Target:  5'- cGUGCCGuuGCCGgacgaCUGCAACGcCAUCUg -3'
miRNA:   3'- -CGCGGC--UGGCa----GAUGUUGCaGUAGAg -5'
24019 5' -52.5 NC_005262.1 + 54446 0.73 0.497231
Target:  5'- cGCGCCGACCGgaaguaucagcGCAACGUCGaggcgcugCUCg -3'
miRNA:   3'- -CGCGGCUGGCaga--------UGUUGCAGUa-------GAG- -5'
24019 5' -52.5 NC_005262.1 + 43984 0.73 0.522354
Target:  5'- cGCGCUGACCGcCUuCGACuUCAUgUCg -3'
miRNA:   3'- -CGCGGCUGGCaGAuGUUGcAGUAgAG- -5'
24019 5' -52.5 NC_005262.1 + 51397 0.73 0.532968
Target:  5'- cGCGCCuGACCGUgUGCAccGCGUg--CUCg -3'
miRNA:   3'- -CGCGG-CUGGCAgAUGU--UGCAguaGAG- -5'
24019 5' -52.5 NC_005262.1 + 45068 0.71 0.619989
Target:  5'- cGCGCgGACUG-CUGC-ACGUCGgccCUCg -3'
miRNA:   3'- -CGCGgCUGGCaGAUGuUGCAGUa--GAG- -5'
24019 5' -52.5 NC_005262.1 + 19696 0.71 0.619989
Target:  5'- aCGCCGACCGccacUCgcaccgaagGCGACGaauacaUCAUCUCg -3'
miRNA:   3'- cGCGGCUGGC----AGa--------UGUUGC------AGUAGAG- -5'
24019 5' -52.5 NC_005262.1 + 44531 0.71 0.631009
Target:  5'- cGCGCUGAUCGUCUACcuccugcCGUUccuguUCUCg -3'
miRNA:   3'- -CGCGGCUGGCAGAUGuu-----GCAGu----AGAG- -5'
24019 5' -52.5 NC_005262.1 + 55489 0.71 0.631009
Target:  5'- gGCGUCGACCGUCUGuu-CGUCGa--- -3'
miRNA:   3'- -CGCGGCUGGCAGAUguuGCAGUagag -5'
24019 5' -52.5 NC_005262.1 + 55101 0.71 0.642029
Target:  5'- cGCGCCGACCG-CgugcGCGAgGUaCAUgUCg -3'
miRNA:   3'- -CGCGGCUGGCaGa---UGUUgCA-GUAgAG- -5'
24019 5' -52.5 NC_005262.1 + 14577 0.7 0.696784
Target:  5'- aGCGCgGACCGUCaGCAGCagg--CUCg -3'
miRNA:   3'- -CGCGgCUGGCAGaUGUUGcaguaGAG- -5'
24019 5' -52.5 NC_005262.1 + 5212 0.7 0.696784
Target:  5'- aGCGCCGcCCGUCgcGCAugGcaggCAUCg- -3'
miRNA:   3'- -CGCGGCuGGCAGa-UGUugCa---GUAGag -5'
24019 5' -52.5 NC_005262.1 + 33707 0.7 0.696784
Target:  5'- uGCGCCGGCgGcuuuucCUGCGACGUCGgggCg -3'
miRNA:   3'- -CGCGGCUGgCa-----GAUGUUGCAGUagaG- -5'
24019 5' -52.5 NC_005262.1 + 44755 0.7 0.707591
Target:  5'- gGCGCgGGCgCGUCgcCGGCGUCuuUCUUg -3'
miRNA:   3'- -CGCGgCUG-GCAGauGUUGCAGu-AGAG- -5'
24019 5' -52.5 NC_005262.1 + 50056 0.7 0.718324
Target:  5'- gGCGCCG-CUGUCUcguCGGCGaUCggCUCg -3'
miRNA:   3'- -CGCGGCuGGCAGAu--GUUGC-AGuaGAG- -5'
24019 5' -52.5 NC_005262.1 + 38526 0.7 0.718324
Target:  5'- cGUGCCG-UCGUC--CGGCGUgAUCUCg -3'
miRNA:   3'- -CGCGGCuGGCAGauGUUGCAgUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.