miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24019 5' -52.5 NC_005262.1 + 55947 0.67 0.854446
Target:  5'- gGCGgCGGCCGUCagauCAugGUCAc--- -3'
miRNA:   3'- -CGCgGCUGGCAGau--GUugCAGUagag -5'
24019 5' -52.5 NC_005262.1 + 22247 0.68 0.80014
Target:  5'- aCGCCGGCCGgcCUGCGcaucACGcCGUCg- -3'
miRNA:   3'- cGCGGCUGGCa-GAUGU----UGCaGUAGag -5'
24019 5' -52.5 NC_005262.1 + 43486 0.68 0.80014
Target:  5'- gGCGgCGACCGUCUACGcggACGgCAa--- -3'
miRNA:   3'- -CGCgGCUGGCAGAUGU---UGCaGUagag -5'
24019 5' -52.5 NC_005262.1 + 6518 0.68 0.828222
Target:  5'- cGCGCCGACC-UCgc---CGUCAcgCUCg -3'
miRNA:   3'- -CGCGGCUGGcAGauguuGCAGUa-GAG- -5'
24019 5' -52.5 NC_005262.1 + 5985 0.67 0.845927
Target:  5'- uUGCCGGCCGgcugCUGCucguuGC-UCAUCUg -3'
miRNA:   3'- cGCGGCUGGCa---GAUGu----UGcAGUAGAg -5'
24019 5' -52.5 NC_005262.1 + 35060 0.67 0.845927
Target:  5'- cCGCCGcauCCGaCUACAccgagaacaACGUCAUCa- -3'
miRNA:   3'- cGCGGCu--GGCaGAUGU---------UGCAGUAGag -5'
24019 5' -52.5 NC_005262.1 + 7726 0.67 0.845927
Target:  5'- uGCGCUGACCG-CU-CAGCGUgAggCUg -3'
miRNA:   3'- -CGCGGCUGGCaGAuGUUGCAgUa-GAg -5'
24019 5' -52.5 NC_005262.1 + 9194 0.67 0.845927
Target:  5'- gGCGCagaucaGcCCGUCcuagGCAACGUCGUUa- -3'
miRNA:   3'- -CGCGg-----CuGGCAGa---UGUUGCAGUAGag -5'
24019 5' -52.5 NC_005262.1 + 40957 0.67 0.845927
Target:  5'- gGCGCUcaGGCUGUCgaacaACGGCGUCGggUUUCu -3'
miRNA:   3'- -CGCGG--CUGGCAGa----UGUUGCAGU--AGAG- -5'
24019 5' -52.5 NC_005262.1 + 4884 0.68 0.80014
Target:  5'- aGCGCCGACuCGacCUGCuucggcguGACGUCGggcaguuugcUCUCg -3'
miRNA:   3'- -CGCGGCUG-GCa-GAUG--------UUGCAGU----------AGAG- -5'
24019 5' -52.5 NC_005262.1 + 59008 0.68 0.790413
Target:  5'- cGCGCuuCGACCGUCUGCAagccGCGgugCAg--- -3'
miRNA:   3'- -CGCG--GCUGGCAGAUGU----UGCa--GUagag -5'
24019 5' -52.5 NC_005262.1 + 61778 0.68 0.78052
Target:  5'- cGCGCCGACCGac--CAGCG-CGUUUUc -3'
miRNA:   3'- -CGCGGCUGGCagauGUUGCaGUAGAG- -5'
24019 5' -52.5 NC_005262.1 + 54854 0.75 0.419772
Target:  5'- cGCGCCGACCGgcucgucaacuaCUACAACGagAaCUCa -3'
miRNA:   3'- -CGCGGCUGGCa-----------GAUGUUGCagUaGAG- -5'
24019 5' -52.5 NC_005262.1 + 32799 0.75 0.421667
Target:  5'- cGCGCCGGCCaUCgcguuCGACGUCGgcCUCa -3'
miRNA:   3'- -CGCGGCUGGcAGau---GUUGCAGUa-GAG- -5'
24019 5' -52.5 NC_005262.1 + 54446 0.73 0.497231
Target:  5'- cGCGCCGACCGgaaguaucagcGCAACGUCGaggcgcugCUCg -3'
miRNA:   3'- -CGCGGCUGGCaga--------UGUUGCAGUa-------GAG- -5'
24019 5' -52.5 NC_005262.1 + 51397 0.73 0.532968
Target:  5'- cGCGCCuGACCGUgUGCAccGCGUg--CUCg -3'
miRNA:   3'- -CGCGG-CUGGCAgAUGU--UGCAguaGAG- -5'
24019 5' -52.5 NC_005262.1 + 55489 0.71 0.631009
Target:  5'- gGCGUCGACCGUCUGuu-CGUCGa--- -3'
miRNA:   3'- -CGCGGCUGGCAGAUguuGCAGUagag -5'
24019 5' -52.5 NC_005262.1 + 44531 0.71 0.631009
Target:  5'- cGCGCUGAUCGUCUACcuccugcCGUUccuguUCUCg -3'
miRNA:   3'- -CGCGGCUGGCAGAUGuu-----GCAGu----AGAG- -5'
24019 5' -52.5 NC_005262.1 + 40363 0.69 0.728971
Target:  5'- aUGUCGAUCGUCgGCGACGUCGa--- -3'
miRNA:   3'- cGCGGCUGGCAGaUGUUGCAGUagag -5'
24019 5' -52.5 NC_005262.1 + 12965 0.69 0.749962
Target:  5'- uCGCCGACCG-CU-CGGCGUCGa--- -3'
miRNA:   3'- cGCGGCUGGCaGAuGUUGCAGUagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.