miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24020 5' -55.7 NC_005262.1 + 14410 0.66 0.759049
Target:  5'- cGGugCGUCg-CCUCA--UGCCUGUCg -3'
miRNA:   3'- -UCugGCGGgaGGAGUucAUGGACAGg -5'
24020 5' -55.7 NC_005262.1 + 30461 0.66 0.748881
Target:  5'- gGGugCGCCUUgCUCGugaAGUcguugACCUGcCCc -3'
miRNA:   3'- -UCugGCGGGAgGAGU---UCA-----UGGACaGG- -5'
24020 5' -55.7 NC_005262.1 + 28769 0.66 0.748881
Target:  5'- cGACCGCgccuuCCUCCaUCAGG-ACCUuGUUg -3'
miRNA:   3'- uCUGGCG-----GGAGG-AGUUCaUGGA-CAGg -5'
24020 5' -55.7 NC_005262.1 + 56793 0.66 0.738599
Target:  5'- cGGACaCGUCCUCCagCGAGcgcACgCUGUCg -3'
miRNA:   3'- -UCUG-GCGGGAGGa-GUUCa--UG-GACAGg -5'
24020 5' -55.7 NC_005262.1 + 34786 0.66 0.728213
Target:  5'- cGGCUGCCCggUCCa-AAGcUGCgUGUCCg -3'
miRNA:   3'- uCUGGCGGG--AGGagUUC-AUGgACAGG- -5'
24020 5' -55.7 NC_005262.1 + 55011 0.66 0.717733
Target:  5'- cGACaCGCCCggcagCgUCAGGUGCgaG-CCg -3'
miRNA:   3'- uCUG-GCGGGa----GgAGUUCAUGgaCaGG- -5'
24020 5' -55.7 NC_005262.1 + 45198 0.67 0.675102
Target:  5'- cGGCCuGCCCUCg-CAGGcgGCaUGUCCg -3'
miRNA:   3'- uCUGG-CGGGAGgaGUUCa-UGgACAGG- -5'
24020 5' -55.7 NC_005262.1 + 2591 0.67 0.66432
Target:  5'- cGACCGCUCUa-UCGGGUugCUG-CUg -3'
miRNA:   3'- uCUGGCGGGAggAGUUCAugGACaGG- -5'
24020 5' -55.7 NC_005262.1 + 32294 0.68 0.610166
Target:  5'- gAGGCCGCCCUUgaagaUCGGGUugU--UCCg -3'
miRNA:   3'- -UCUGGCGGGAGg----AGUUCAugGacAGG- -5'
24020 5' -55.7 NC_005262.1 + 28725 0.68 0.599354
Target:  5'- uAGAgCGCCUUCgaCAGGcGCUUGUUCa -3'
miRNA:   3'- -UCUgGCGGGAGgaGUUCaUGGACAGG- -5'
24020 5' -55.7 NC_005262.1 + 23854 0.68 0.588569
Target:  5'- -cGCCGCCCUUg-CcGGUGCCgcccGUCCg -3'
miRNA:   3'- ucUGGCGGGAGgaGuUCAUGGa---CAGG- -5'
24020 5' -55.7 NC_005262.1 + 11162 0.7 0.483883
Target:  5'- cGGGCCGCCCUUuggccgcucgggCUCAGGcgacgcugcgGCCUGUUg -3'
miRNA:   3'- -UCUGGCGGGAG------------GAGUUCa---------UGGACAGg -5'
24020 5' -55.7 NC_005262.1 + 27894 1.12 0.000649
Target:  5'- aAGACCGCCCUCCUCAAGUACCUGUCCg -3'
miRNA:   3'- -UCUGGCGGGAGGAGUUCAUGGACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.