Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24020 | 5' | -55.7 | NC_005262.1 | + | 27894 | 1.12 | 0.000649 |
Target: 5'- aAGACCGCCCUCCUCAAGUACCUGUCCg -3' miRNA: 3'- -UCUGGCGGGAGGAGUUCAUGGACAGG- -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 11162 | 0.7 | 0.483883 |
Target: 5'- cGGGCCGCCCUUuggccgcucgggCUCAGGcgacgcugcgGCCUGUUg -3' miRNA: 3'- -UCUGGCGGGAG------------GAGUUCa---------UGGACAGg -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 23854 | 0.68 | 0.588569 |
Target: 5'- -cGCCGCCCUUg-CcGGUGCCgcccGUCCg -3' miRNA: 3'- ucUGGCGGGAGgaGuUCAUGGa---CAGG- -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 28725 | 0.68 | 0.599354 |
Target: 5'- uAGAgCGCCUUCgaCAGGcGCUUGUUCa -3' miRNA: 3'- -UCUgGCGGGAGgaGUUCaUGGACAGG- -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 32294 | 0.68 | 0.610166 |
Target: 5'- gAGGCCGCCCUUgaagaUCGGGUugU--UCCg -3' miRNA: 3'- -UCUGGCGGGAGg----AGUUCAugGacAGG- -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 2591 | 0.67 | 0.66432 |
Target: 5'- cGACCGCUCUa-UCGGGUugCUG-CUg -3' miRNA: 3'- uCUGGCGGGAggAGUUCAugGACaGG- -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 45198 | 0.67 | 0.675102 |
Target: 5'- cGGCCuGCCCUCg-CAGGcgGCaUGUCCg -3' miRNA: 3'- uCUGG-CGGGAGgaGUUCa-UGgACAGG- -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 55011 | 0.66 | 0.717733 |
Target: 5'- cGACaCGCCCggcagCgUCAGGUGCgaG-CCg -3' miRNA: 3'- uCUG-GCGGGa----GgAGUUCAUGgaCaGG- -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 34786 | 0.66 | 0.728213 |
Target: 5'- cGGCUGCCCggUCCa-AAGcUGCgUGUCCg -3' miRNA: 3'- uCUGGCGGG--AGGagUUC-AUGgACAGG- -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 56793 | 0.66 | 0.738599 |
Target: 5'- cGGACaCGUCCUCCagCGAGcgcACgCUGUCg -3' miRNA: 3'- -UCUG-GCGGGAGGa-GUUCa--UG-GACAGg -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 30461 | 0.66 | 0.748881 |
Target: 5'- gGGugCGCCUUgCUCGugaAGUcguugACCUGcCCc -3' miRNA: 3'- -UCugGCGGGAgGAGU---UCA-----UGGACaGG- -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 28769 | 0.66 | 0.748881 |
Target: 5'- cGACCGCgccuuCCUCCaUCAGG-ACCUuGUUg -3' miRNA: 3'- uCUGGCG-----GGAGG-AGUUCaUGGA-CAGg -5' |
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24020 | 5' | -55.7 | NC_005262.1 | + | 14410 | 0.66 | 0.759049 |
Target: 5'- cGGugCGUCg-CCUCA--UGCCUGUCg -3' miRNA: 3'- -UCugGCGGgaGGAGUucAUGGACAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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