miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24021 3' -55.2 NC_005262.1 + 28216 0.66 0.796727
Target:  5'- gAUGGCGAgcaUGACGuCGA-GG--UCGaCCCa -3'
miRNA:   3'- -UGCCGCU---ACUGC-GCUaCCuaAGC-GGG- -5'
24021 3' -55.2 NC_005262.1 + 37927 0.66 0.79291
Target:  5'- gUGGaCGAuUGGCGCGcAUGGAccgcgacgccaaCGCCCg -3'
miRNA:   3'- uGCC-GCU-ACUGCGC-UACCUaa----------GCGGG- -5'
24021 3' -55.2 NC_005262.1 + 46922 0.66 0.786167
Target:  5'- cCGGCGAaGGCGCaagccugGAUGGAUUgGgCg -3'
miRNA:   3'- uGCCGCUaCUGCG-------CUACCUAAgCgGg -5'
24021 3' -55.2 NC_005262.1 + 53449 0.66 0.767496
Target:  5'- -aGGCGcAUGGCGcCGAUcaGGUUCGCgCg -3'
miRNA:   3'- ugCCGC-UACUGC-GCUAc-CUAAGCGgG- -5'
24021 3' -55.2 NC_005262.1 + 22773 0.66 0.75747
Target:  5'- gGCGGuCGA-GGCGCGucugcgcacUGGuccgCGCCCu -3'
miRNA:   3'- -UGCC-GCUaCUGCGCu--------ACCuaa-GCGGG- -5'
24021 3' -55.2 NC_005262.1 + 51421 0.66 0.75747
Target:  5'- cAUGGCGGauucgaucuUGcCGCGcgcGGAUgCGCCCa -3'
miRNA:   3'- -UGCCGCU---------ACuGCGCua-CCUAaGCGGG- -5'
24021 3' -55.2 NC_005262.1 + 15514 0.66 0.75747
Target:  5'- cCGGCGAgcUGcACaagGCGAUGuGGUUCggcuGCCCa -3'
miRNA:   3'- uGCCGCU--AC-UG---CGCUAC-CUAAG----CGGG- -5'
24021 3' -55.2 NC_005262.1 + 62843 0.66 0.75747
Target:  5'- cACGGCuc-GACGCGGUacgaGGAUggcaCGCCg -3'
miRNA:   3'- -UGCCGcuaCUGCGCUA----CCUAa---GCGGg -5'
24021 3' -55.2 NC_005262.1 + 13558 0.66 0.75747
Target:  5'- aGCGcGCGAc-GCGCGcgGGcuucgCGCCCu -3'
miRNA:   3'- -UGC-CGCUacUGCGCuaCCuaa--GCGGG- -5'
24021 3' -55.2 NC_005262.1 + 9049 0.66 0.75747
Target:  5'- cUGGCuccgGAUG-GGUGGAgugcgUCGCCCg -3'
miRNA:   3'- uGCCGcua-CUGCgCUACCUa----AGCGGG- -5'
24021 3' -55.2 NC_005262.1 + 55285 0.67 0.74732
Target:  5'- gACGGCGGUugUGCGuGUGGAaauucugcUCGUCCg -3'
miRNA:   3'- -UGCCGCUAcuGCGC-UACCUa-------AGCGGG- -5'
24021 3' -55.2 NC_005262.1 + 16404 0.67 0.74732
Target:  5'- cGCGGCGAUGAccauaaCGCGGUcGAUcgguugcaCGCCg -3'
miRNA:   3'- -UGCCGCUACU------GCGCUAcCUAa-------GCGGg -5'
24021 3' -55.2 NC_005262.1 + 40078 0.67 0.737058
Target:  5'- aGCGaGCGAUG-UGCGAgGGGUUgGUCa -3'
miRNA:   3'- -UGC-CGCUACuGCGCUaCCUAAgCGGg -5'
24021 3' -55.2 NC_005262.1 + 50934 0.67 0.726694
Target:  5'- uGCGGCauuucuGCGCGcgGGAUgccagcgUGCCCg -3'
miRNA:   3'- -UGCCGcuac--UGCGCuaCCUAa------GCGGG- -5'
24021 3' -55.2 NC_005262.1 + 59949 0.67 0.716239
Target:  5'- -aGGCGcu--CGCGAagcaGAUUCGCCCg -3'
miRNA:   3'- ugCCGCuacuGCGCUac--CUAAGCGGG- -5'
24021 3' -55.2 NC_005262.1 + 29258 0.67 0.716239
Target:  5'- uCGGCGAcggccgccUGACGC-AUGGucgCGCgCCa -3'
miRNA:   3'- uGCCGCU--------ACUGCGcUACCuaaGCG-GG- -5'
24021 3' -55.2 NC_005262.1 + 44943 0.67 0.716239
Target:  5'- cUGGCGGUccuCGCGGgcccacGAUUCGCCUg -3'
miRNA:   3'- uGCCGCUAcu-GCGCUac----CUAAGCGGG- -5'
24021 3' -55.2 NC_005262.1 + 23457 0.67 0.713087
Target:  5'- cUGGCGcAUG-CGCGGccuggacgaauggcUGGGcgaggUUCGCCCg -3'
miRNA:   3'- uGCCGC-UACuGCGCU--------------ACCU-----AAGCGGG- -5'
24021 3' -55.2 NC_005262.1 + 41266 0.67 0.705704
Target:  5'- gGCGGCGAUcACGCa---GAUUCGgCCg -3'
miRNA:   3'- -UGCCGCUAcUGCGcuacCUAAGCgGG- -5'
24021 3' -55.2 NC_005262.1 + 30183 0.67 0.705704
Target:  5'- cGCGGCGGccGGCGUGucg---UCGCCCu -3'
miRNA:   3'- -UGCCGCUa-CUGCGCuaccuaAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.