miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24021 5' -55.6 NC_005262.1 + 22328 0.66 0.780663
Target:  5'- uGCGCagGccGGcCGGCGUgggcggCGCGGCCGu -3'
miRNA:   3'- -CGCGagCuaCUuGUCGCA------GUGCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 21512 0.66 0.780663
Target:  5'- -aGCUCGcgGAcguCGGcCGUCGCGaGCuCGg -3'
miRNA:   3'- cgCGAGCuaCUu--GUC-GCAGUGC-CG-GC- -5'
24021 5' -55.6 NC_005262.1 + 41358 0.66 0.780663
Target:  5'- gGCaGCUCGcgG-ACGGCacgaacggCACGGCUGa -3'
miRNA:   3'- -CG-CGAGCuaCuUGUCGca------GUGCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 58219 0.66 0.780663
Target:  5'- gGCGCcgcccguaccaCGAacuUGGGCAGCGUUACcgaGGCUGg -3'
miRNA:   3'- -CGCGa----------GCU---ACUUGUCGCAGUG---CCGGC- -5'
24021 5' -55.6 NC_005262.1 + 11639 0.66 0.780663
Target:  5'- aGCGCgcgUGAUGcacuuCAGcCGgcgaGCGGCCGa -3'
miRNA:   3'- -CGCGa--GCUACuu---GUC-GCag--UGCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 44848 0.66 0.770833
Target:  5'- cGCGCUggCGAUGucgaacugaGACuucgagaagucgAGauaGUCGCGGCCGa -3'
miRNA:   3'- -CGCGA--GCUAC---------UUG------------UCg--CAGUGCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 16501 0.66 0.770833
Target:  5'- uGCGcCUCGcgGcGCAGaaUCccgGCGGCCGg -3'
miRNA:   3'- -CGC-GAGCuaCuUGUCgcAG---UGCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 11426 0.66 0.770833
Target:  5'- cGCGCgCGA---GCGGCGUCuugcggaggAgGGCCGa -3'
miRNA:   3'- -CGCGaGCUacuUGUCGCAG---------UgCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 28893 0.66 0.770833
Target:  5'- -aGCUCGAgaUGcGCGGgcgcgagGUCACGGUCGa -3'
miRNA:   3'- cgCGAGCU--ACuUGUCg------CAGUGCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 187 0.66 0.770833
Target:  5'- -gGC-CGGUGAcaugcgcagaaGCGuGCGgCGCGGCCGa -3'
miRNA:   3'- cgCGaGCUACU-----------UGU-CGCaGUGCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 23510 0.66 0.760864
Target:  5'- -gGCUCGAUGAcGCGGC-UCAUGcugcccGCCGc -3'
miRNA:   3'- cgCGAGCUACU-UGUCGcAGUGC------CGGC- -5'
24021 5' -55.6 NC_005262.1 + 56279 0.66 0.760864
Target:  5'- cGgGCUCGgcGAGCAGuCGgcgaagaacCGCGGCUu -3'
miRNA:   3'- -CgCGAGCuaCUUGUC-GCa--------GUGCCGGc -5'
24021 5' -55.6 NC_005262.1 + 60140 0.66 0.760864
Target:  5'- uGCGCagGAUGAACGccGgGUUAUaGCCGg -3'
miRNA:   3'- -CGCGagCUACUUGU--CgCAGUGcCGGC- -5'
24021 5' -55.6 NC_005262.1 + 48787 0.66 0.750769
Target:  5'- cGCGUcuuUCuGcgGcGCGGCGUC-CGGCUGg -3'
miRNA:   3'- -CGCG---AG-CuaCuUGUCGCAGuGCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 32783 0.66 0.750769
Target:  5'- -aGCUCGAcaccGGCGGCG-CGCcGGCCa -3'
miRNA:   3'- cgCGAGCUac--UUGUCGCaGUG-CCGGc -5'
24021 5' -55.6 NC_005262.1 + 40593 0.66 0.750769
Target:  5'- cGCGCUgaCGGUGGcgcagaugccGCAGCauaaUCACGGCg- -3'
miRNA:   3'- -CGCGA--GCUACU----------UGUCGc---AGUGCCGgc -5'
24021 5' -55.6 NC_005262.1 + 51496 0.66 0.750769
Target:  5'- cGCGC-CGccGAGCAcGCGgugcaCACGGUCa -3'
miRNA:   3'- -CGCGaGCuaCUUGU-CGCa----GUGCCGGc -5'
24021 5' -55.6 NC_005262.1 + 63057 0.66 0.750769
Target:  5'- -gGCcUGAUaGAGCcGCGUguCGGCCGg -3'
miRNA:   3'- cgCGaGCUA-CUUGuCGCAguGCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 52282 0.66 0.750769
Target:  5'- gGCGCuUCGAcuccugcacgcUGGucaugcccuCGGCGUCGaGGCCGg -3'
miRNA:   3'- -CGCG-AGCU-----------ACUu--------GUCGCAGUgCCGGC- -5'
24021 5' -55.6 NC_005262.1 + 56707 0.66 0.748736
Target:  5'- uGCGCUCGcUGGAggacguguccgaGGCGUCggcguucgacAUGGCCGc -3'
miRNA:   3'- -CGCGAGCuACUUg-----------UCGCAG----------UGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.