Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24022 | 3' | -54.2 | NC_005262.1 | + | 7137 | 0.67 | 0.749658 |
Target: 5'- aGCGAgCGUGAauggcucgcgaugCGCGCGaagGACCUGAc -3' miRNA: 3'- gCGCUaGUACUg------------GUGCGCa--CUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 40241 | 0.68 | 0.733062 |
Target: 5'- uCGUGcgCGUGACCGCGCGcagcaaUGACa--- -3' miRNA: 3'- -GCGCuaGUACUGGUGCGC------ACUGgacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 43741 | 0.68 | 0.722558 |
Target: 5'- cCGCGAUCGUG--CGCGUGcUGACCa-- -3' miRNA: 3'- -GCGCUAGUACugGUGCGC-ACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 5559 | 0.68 | 0.722558 |
Target: 5'- gCGCgGAUCGUcACCACGCacGaACCUGAa -3' miRNA: 3'- -GCG-CUAGUAcUGGUGCGcaC-UGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 35186 | 0.69 | 0.625349 |
Target: 5'- --aGGUCAcGACCGcCGCGUGGCCa-- -3' miRNA: 3'- gcgCUAGUaCUGGU-GCGCACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 42675 | 0.69 | 0.668931 |
Target: 5'- uGCGAgcCGUGGCgcccgCACGCGUGGCCc-- -3' miRNA: 3'- gCGCUa-GUACUG-----GUGCGCACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 33017 | 0.69 | 0.640624 |
Target: 5'- aGCGAUCGUGAaggcgcuggcgagcgUCGCGCGUGcgacgccgccgGCUUGGc -3' miRNA: 3'- gCGCUAGUACU---------------GGUGCGCAC-----------UGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 55336 | 0.69 | 0.665673 |
Target: 5'- gCGUGAUgAUGACCGCauccggauuguugaGCGcGGCCUGc -3' miRNA: 3'- -GCGCUAgUACUGGUG--------------CGCaCUGGACu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 41269 | 0.7 | 0.614444 |
Target: 5'- gGCGAUCAcgcagauucGGCCGCGCGUGGgCg-- -3' miRNA: 3'- gCGCUAGUa--------CUGGUGCGCACUgGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 11042 | 0.7 | 0.592689 |
Target: 5'- cCGCGcgCAgcaacaGGCCGCaGCGUcGCCUGAg -3' miRNA: 3'- -GCGCuaGUa-----CUGGUG-CGCAcUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 60484 | 0.71 | 0.556039 |
Target: 5'- gCGCGAUCAgggcgagacgccgGGCCGCGCGgcgcaGGCCg-- -3' miRNA: 3'- -GCGCUAGUa------------CUGGUGCGCa----CUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 45172 | 0.71 | 0.560321 |
Target: 5'- gCGCGGUCAacgUGuccuGCgCGCGCGUGAugcCCUGGa -3' miRNA: 3'- -GCGCUAGU---AC----UG-GUGCGCACU---GGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 38512 | 0.73 | 0.447311 |
Target: 5'- gCGUGAUCucGACCGCGCc-GGCCUGGa -3' miRNA: 3'- -GCGCUAGuaCUGGUGCGcaCUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 40405 | 0.74 | 0.356461 |
Target: 5'- gCGCGGauUCA--GCCGCGCGUcggcGACCUGAa -3' miRNA: 3'- -GCGCU--AGUacUGGUGCGCA----CUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 28482 | 1.09 | 0.001668 |
Target: 5'- gCGCGAUCAUGACCACGCGUGACCUGAu -3' miRNA: 3'- -GCGCUAGUACUGGUGCGCACUGGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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