miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24022 3' -54.2 NC_005262.1 + 28482 1.09 0.001668
Target:  5'- gCGCGAUCAUGACCACGCGUGACCUGAu -3'
miRNA:   3'- -GCGCUAGUACUGGUGCGCACUGGACU- -5'
24022 3' -54.2 NC_005262.1 + 40405 0.74 0.356461
Target:  5'- gCGCGGauUCA--GCCGCGCGUcggcGACCUGAa -3'
miRNA:   3'- -GCGCU--AGUacUGGUGCGCA----CUGGACU- -5'
24022 3' -54.2 NC_005262.1 + 38512 0.73 0.447311
Target:  5'- gCGUGAUCucGACCGCGCc-GGCCUGGa -3'
miRNA:   3'- -GCGCUAGuaCUGGUGCGcaCUGGACU- -5'
24022 3' -54.2 NC_005262.1 + 60484 0.71 0.556039
Target:  5'- gCGCGAUCAgggcgagacgccgGGCCGCGCGgcgcaGGCCg-- -3'
miRNA:   3'- -GCGCUAGUa------------CUGGUGCGCa----CUGGacu -5'
24022 3' -54.2 NC_005262.1 + 45172 0.71 0.560321
Target:  5'- gCGCGGUCAacgUGuccuGCgCGCGCGUGAugcCCUGGa -3'
miRNA:   3'- -GCGCUAGU---AC----UG-GUGCGCACU---GGACU- -5'
24022 3' -54.2 NC_005262.1 + 11042 0.7 0.592689
Target:  5'- cCGCGcgCAgcaacaGGCCGCaGCGUcGCCUGAg -3'
miRNA:   3'- -GCGCuaGUa-----CUGGUG-CGCAcUGGACU- -5'
24022 3' -54.2 NC_005262.1 + 41269 0.7 0.614444
Target:  5'- gGCGAUCAcgcagauucGGCCGCGCGUGGgCg-- -3'
miRNA:   3'- gCGCUAGUa--------CUGGUGCGCACUgGacu -5'
24022 3' -54.2 NC_005262.1 + 35186 0.69 0.625349
Target:  5'- --aGGUCAcGACCGcCGCGUGGCCa-- -3'
miRNA:   3'- gcgCUAGUaCUGGU-GCGCACUGGacu -5'
24022 3' -54.2 NC_005262.1 + 33017 0.69 0.640624
Target:  5'- aGCGAUCGUGAaggcgcuggcgagcgUCGCGCGUGcgacgccgccgGCUUGGc -3'
miRNA:   3'- gCGCUAGUACU---------------GGUGCGCAC-----------UGGACU- -5'
24022 3' -54.2 NC_005262.1 + 55336 0.69 0.665673
Target:  5'- gCGUGAUgAUGACCGCauccggauuguugaGCGcGGCCUGc -3'
miRNA:   3'- -GCGCUAgUACUGGUG--------------CGCaCUGGACu -5'
24022 3' -54.2 NC_005262.1 + 42675 0.69 0.668931
Target:  5'- uGCGAgcCGUGGCgcccgCACGCGUGGCCc-- -3'
miRNA:   3'- gCGCUa-GUACUG-----GUGCGCACUGGacu -5'
24022 3' -54.2 NC_005262.1 + 5559 0.68 0.722558
Target:  5'- gCGCgGAUCGUcACCACGCacGaACCUGAa -3'
miRNA:   3'- -GCG-CUAGUAcUGGUGCGcaC-UGGACU- -5'
24022 3' -54.2 NC_005262.1 + 43741 0.68 0.722558
Target:  5'- cCGCGAUCGUG--CGCGUGcUGACCa-- -3'
miRNA:   3'- -GCGCUAGUACugGUGCGC-ACUGGacu -5'
24022 3' -54.2 NC_005262.1 + 40241 0.68 0.733062
Target:  5'- uCGUGcgCGUGACCGCGCGcagcaaUGACa--- -3'
miRNA:   3'- -GCGCuaGUACUGGUGCGC------ACUGgacu -5'
24022 3' -54.2 NC_005262.1 + 17203 0.67 0.743467
Target:  5'- uGUGGUcCAUcGCCGCGCGgugGACCUc- -3'
miRNA:   3'- gCGCUA-GUAcUGGUGCGCa--CUGGAcu -5'
24022 3' -54.2 NC_005262.1 + 48440 0.67 0.743467
Target:  5'- gGCGG-CAUGACCACGCGcGcguauGCCgcgcgGAu -3'
miRNA:   3'- gCGCUaGUACUGGUGCGCaC-----UGGa----CU- -5'
24022 3' -54.2 NC_005262.1 + 7137 0.67 0.749658
Target:  5'- aGCGAgCGUGAauggcucgcgaugCGCGCGaagGACCUGAc -3'
miRNA:   3'- gCGCUaGUACUg------------GUGCGCa--CUGGACU- -5'
24022 3' -54.2 NC_005262.1 + 12982 0.67 0.763935
Target:  5'- uCGaCGAcCGcGAcCCGCGCGUGACgUGGg -3'
miRNA:   3'- -GC-GCUaGUaCU-GGUGCGCACUGgACU- -5'
24022 3' -54.2 NC_005262.1 + 23727 0.66 0.792644
Target:  5'- gGCGAUCAcccugcuuUGACCAaccugcccgcaGCGUGcgggcuuuuucacACCUGAu -3'
miRNA:   3'- gCGCUAGU--------ACUGGUg----------CGCAC-------------UGGACU- -5'
24022 3' -54.2 NC_005262.1 + 59632 0.66 0.79361
Target:  5'- uCGCGcuccUCGUGGCCcauuGCGCGcuUGACCUu- -3'
miRNA:   3'- -GCGCu---AGUACUGG----UGCGC--ACUGGAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.