Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24022 | 3' | -54.2 | NC_005262.1 | + | 60484 | 0.71 | 0.556039 |
Target: 5'- gCGCGAUCAgggcgagacgccgGGCCGCGCGgcgcaGGCCg-- -3' miRNA: 3'- -GCGCUAGUa------------CUGGUGCGCa----CUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 59632 | 0.66 | 0.79361 |
Target: 5'- uCGCGcuccUCGUGGCCcauuGCGCGcuUGACCUu- -3' miRNA: 3'- -GCGCu---AGUACUGG----UGCGC--ACUGGAcu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 55750 | 0.66 | 0.803185 |
Target: 5'- uCGUGuUCGUGACCG-GCGUG-CCgGAc -3' miRNA: 3'- -GCGCuAGUACUGGUgCGCACuGGaCU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 55336 | 0.69 | 0.665673 |
Target: 5'- gCGUGAUgAUGACCGCauccggauuguugaGCGcGGCCUGc -3' miRNA: 3'- -GCGCUAgUACUGGUG--------------CGCaCUGGACu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 49462 | 0.66 | 0.839626 |
Target: 5'- cCGCGGUgAUGAacgCGCGCGUcGCCg-- -3' miRNA: 3'- -GCGCUAgUACUg--GUGCGCAcUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 48440 | 0.67 | 0.743467 |
Target: 5'- gGCGG-CAUGACCACGCGcGcguauGCCgcgcgGAu -3' miRNA: 3'- gCGCUaGUACUGGUGCGCaC-----UGGa----CU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 45172 | 0.71 | 0.560321 |
Target: 5'- gCGCGGUCAacgUGuccuGCgCGCGCGUGAugcCCUGGa -3' miRNA: 3'- -GCGCUAGU---AC----UG-GUGCGCACU---GGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 44275 | 0.66 | 0.830814 |
Target: 5'- gCGCGAUUuucUGACCGCaGCGUucGCCUa- -3' miRNA: 3'- -GCGCUAGu--ACUGGUG-CGCAc-UGGAcu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 43997 | 0.66 | 0.812584 |
Target: 5'- cCGCGGUUGgcGCCGCGC-UGACCg-- -3' miRNA: 3'- -GCGCUAGUacUGGUGCGcACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 43959 | 0.66 | 0.830814 |
Target: 5'- aCGUGAgCAUGAUCuacgaggcucuGCGCGUGAUCg-- -3' miRNA: 3'- -GCGCUaGUACUGG-----------UGCGCACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 43741 | 0.68 | 0.722558 |
Target: 5'- cCGCGAUCGUG--CGCGUGcUGACCa-- -3' miRNA: 3'- -GCGCUAGUACugGUGCGC-ACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 43656 | 0.66 | 0.803185 |
Target: 5'- uGUGA-CAUGG-CACGUGgcGACCUGAa -3' miRNA: 3'- gCGCUaGUACUgGUGCGCa-CUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 42675 | 0.69 | 0.668931 |
Target: 5'- uGCGAgcCGUGGCgcccgCACGCGUGGCCc-- -3' miRNA: 3'- gCGCUa-GUACUG-----GUGCGCACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 41269 | 0.7 | 0.614444 |
Target: 5'- gGCGAUCAcgcagauucGGCCGCGCGUGGgCg-- -3' miRNA: 3'- gCGCUAGUa--------CUGGUGCGCACUgGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 40405 | 0.74 | 0.356461 |
Target: 5'- gCGCGGauUCA--GCCGCGCGUcggcGACCUGAa -3' miRNA: 3'- -GCGCU--AGUacUGGUGCGCA----CUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 40241 | 0.68 | 0.733062 |
Target: 5'- uCGUGcgCGUGACCGCGCGcagcaaUGACa--- -3' miRNA: 3'- -GCGCuaGUACUGGUGCGC------ACUGgacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 38512 | 0.73 | 0.447311 |
Target: 5'- gCGUGAUCucGACCGCGCc-GGCCUGGa -3' miRNA: 3'- -GCGCUAGuaCUGGUGCGcaCUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 37129 | 0.66 | 0.830814 |
Target: 5'- uCGCGAUCA--GCCGCcuguUGUGGCCgGAu -3' miRNA: 3'- -GCGCUAGUacUGGUGc---GCACUGGaCU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 35427 | 0.66 | 0.821797 |
Target: 5'- uGCG-UCGUaGAUCGCgaaauGCGUGACCgUGAu -3' miRNA: 3'- gCGCuAGUA-CUGGUG-----CGCACUGG-ACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 35262 | 0.66 | 0.818135 |
Target: 5'- gGCGGUCGUGACCucauugccgccaGCGUcGCCcgGAu -3' miRNA: 3'- gCGCUAGUACUGGug----------CGCAcUGGa-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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