Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24022 | 3' | -54.2 | NC_005262.1 | + | 35186 | 0.69 | 0.625349 |
Target: 5'- --aGGUCAcGACCGcCGCGUGGCCa-- -3' miRNA: 3'- gcgCUAGUaCUGGU-GCGCACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 33017 | 0.69 | 0.640624 |
Target: 5'- aGCGAUCGUGAaggcgcuggcgagcgUCGCGCGUGcgacgccgccgGCUUGGc -3' miRNA: 3'- gCGCUAGUACU---------------GGUGCGCAC-----------UGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 28562 | 0.66 | 0.79361 |
Target: 5'- gCGUGGUCAUGAUCGCGCa-GugCa-- -3' miRNA: 3'- -GCGCUAGUACUGGUGCGcaCugGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 28482 | 1.09 | 0.001668 |
Target: 5'- gCGCGAUCAUGACCACGCGUGACCUGAu -3' miRNA: 3'- -GCGCUAGUACUGGUGCGCACUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 26953 | 0.66 | 0.821797 |
Target: 5'- -uCGAUCGUGACCGUGCGggagaGGCCa-- -3' miRNA: 3'- gcGCUAGUACUGGUGCGCa----CUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 23727 | 0.66 | 0.792644 |
Target: 5'- gGCGAUCAcccugcuuUGACCAaccugcccgcaGCGUGcgggcuuuuucacACCUGAu -3' miRNA: 3'- gCGCUAGU--------ACUGGUg----------CGCAC-------------UGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 17203 | 0.67 | 0.743467 |
Target: 5'- uGUGGUcCAUcGCCGCGCGgugGACCUc- -3' miRNA: 3'- gCGCUA-GUAcUGGUGCGCa--CUGGAcu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 16548 | 0.66 | 0.834364 |
Target: 5'- uGCGAagccgcucccguUCAcGGCCgcggaugccgagcagGCGCGUGugCUGGu -3' miRNA: 3'- gCGCU------------AGUaCUGG---------------UGCGCACugGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 12982 | 0.67 | 0.763935 |
Target: 5'- uCGaCGAcCGcGAcCCGCGCGUGACgUGGg -3' miRNA: 3'- -GC-GCUaGUaCU-GGUGCGCACUGgACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 11042 | 0.7 | 0.592689 |
Target: 5'- cCGCGcgCAgcaacaGGCCGCaGCGUcGCCUGAg -3' miRNA: 3'- -GCGCuaGUa-----CUGGUG-CGCAcUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 10700 | 0.66 | 0.803185 |
Target: 5'- gCGCaGAUCGaGGCCGCGCGcacgcGGCCg-- -3' miRNA: 3'- -GCG-CUAGUaCUGGUGCGCa----CUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 7137 | 0.67 | 0.749658 |
Target: 5'- aGCGAgCGUGAauggcucgcgaugCGCGCGaagGACCUGAc -3' miRNA: 3'- gCGCUaGUACUg------------GUGCGCa--CUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 5559 | 0.68 | 0.722558 |
Target: 5'- gCGCgGAUCGUcACCACGCacGaACCUGAa -3' miRNA: 3'- -GCG-CUAGUAcUGGUGCGcaC-UGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 2521 | 0.66 | 0.821797 |
Target: 5'- aGCGGUCG---UCAuCGCGUGGCgUGAa -3' miRNA: 3'- gCGCUAGUacuGGU-GCGCACUGgACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 765 | 0.66 | 0.821797 |
Target: 5'- aCGCGcUCGUcGCCGagguucggGCGUGGCUUGAc -3' miRNA: 3'- -GCGCuAGUAcUGGUg-------CGCACUGGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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