Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24022 | 3' | -54.2 | NC_005262.1 | + | 16548 | 0.66 | 0.834364 |
Target: 5'- uGCGAagccgcucccguUCAcGGCCgcggaugccgagcagGCGCGUGugCUGGu -3' miRNA: 3'- gCGCU------------AGUaCUGG---------------UGCGCACugGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 23727 | 0.66 | 0.792644 |
Target: 5'- gGCGAUCAcccugcuuUGACCAaccugcccgcaGCGUGcgggcuuuuucacACCUGAu -3' miRNA: 3'- gCGCUAGU--------ACUGGUg----------CGCAC-------------UGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 43656 | 0.66 | 0.803185 |
Target: 5'- uGUGA-CAUGG-CACGUGgcGACCUGAa -3' miRNA: 3'- gCGCUaGUACUgGUGCGCa-CUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 10700 | 0.66 | 0.803185 |
Target: 5'- gCGCaGAUCGaGGCCGCGCGcacgcGGCCg-- -3' miRNA: 3'- -GCG-CUAGUaCUGGUGCGCa----CUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 2521 | 0.66 | 0.821797 |
Target: 5'- aGCGGUCG---UCAuCGCGUGGCgUGAa -3' miRNA: 3'- gCGCUAGUacuGGU-GCGCACUGgACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 765 | 0.66 | 0.821797 |
Target: 5'- aCGCGcUCGUcGCCGagguucggGCGUGGCUUGAc -3' miRNA: 3'- -GCGCuAGUAcUGGUg-------CGCACUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 37129 | 0.66 | 0.830814 |
Target: 5'- uCGCGAUCA--GCCGCcuguUGUGGCCgGAu -3' miRNA: 3'- -GCGCUAGUacUGGUGc---GCACUGGaCU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 43959 | 0.66 | 0.830814 |
Target: 5'- aCGUGAgCAUGAUCuacgaggcucuGCGCGUGAUCg-- -3' miRNA: 3'- -GCGCUaGUACUGG-----------UGCGCACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 44275 | 0.66 | 0.830814 |
Target: 5'- gCGCGAUUuucUGACCGCaGCGUucGCCUa- -3' miRNA: 3'- -GCGCUAGu--ACUGGUG-CGCAc-UGGAcu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 12982 | 0.67 | 0.763935 |
Target: 5'- uCGaCGAcCGcGAcCCGCGCGUGACgUGGg -3' miRNA: 3'- -GC-GCUaGUaCU-GGUGCGCACUGgACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 48440 | 0.67 | 0.743467 |
Target: 5'- gGCGG-CAUGACCACGCGcGcguauGCCgcgcgGAu -3' miRNA: 3'- gCGCUaGUACUGGUGCGCaC-----UGGa----CU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 40241 | 0.68 | 0.733062 |
Target: 5'- uCGUGcgCGUGACCGCGCGcagcaaUGACa--- -3' miRNA: 3'- -GCGCuaGUACUGGUGCGC------ACUGgacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 40405 | 0.74 | 0.356461 |
Target: 5'- gCGCGGauUCA--GCCGCGCGUcggcGACCUGAa -3' miRNA: 3'- -GCGCU--AGUacUGGUGCGCA----CUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 60484 | 0.71 | 0.556039 |
Target: 5'- gCGCGAUCAgggcgagacgccgGGCCGCGCGgcgcaGGCCg-- -3' miRNA: 3'- -GCGCUAGUa------------CUGGUGCGCa----CUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 11042 | 0.7 | 0.592689 |
Target: 5'- cCGCGcgCAgcaacaGGCCGCaGCGUcGCCUGAg -3' miRNA: 3'- -GCGCuaGUa-----CUGGUG-CGCAcUGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 41269 | 0.7 | 0.614444 |
Target: 5'- gGCGAUCAcgcagauucGGCCGCGCGUGGgCg-- -3' miRNA: 3'- gCGCUAGUa--------CUGGUGCGCACUgGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 35186 | 0.69 | 0.625349 |
Target: 5'- --aGGUCAcGACCGcCGCGUGGCCa-- -3' miRNA: 3'- gcgCUAGUaCUGGU-GCGCACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 42675 | 0.69 | 0.668931 |
Target: 5'- uGCGAgcCGUGGCgcccgCACGCGUGGCCc-- -3' miRNA: 3'- gCGCUa-GUACUG-----GUGCGCACUGGacu -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 5559 | 0.68 | 0.722558 |
Target: 5'- gCGCgGAUCGUcACCACGCacGaACCUGAa -3' miRNA: 3'- -GCG-CUAGUAcUGGUGCGcaC-UGGACU- -5' |
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24022 | 3' | -54.2 | NC_005262.1 | + | 43741 | 0.68 | 0.722558 |
Target: 5'- cCGCGAUCGUG--CGCGUGcUGACCa-- -3' miRNA: 3'- -GCGCUAGUACugGUGCGC-ACUGGacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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