miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24023 5' -67.5 NC_005262.1 + 20673 0.66 0.23365
Target:  5'- -cCUGCgGCGc-GCCGCGCGCugcucgCCGGGc -3'
miRNA:   3'- aaGGCGgCGCucCGGCGCGCG------GGCCU- -5'
24023 5' -67.5 NC_005262.1 + 22317 0.66 0.23365
Target:  5'- -gCCGgCGUG-GGCgGCGCGgCCGuGAg -3'
miRNA:   3'- aaGGCgGCGCuCCGgCGCGCgGGC-CU- -5'
24023 5' -67.5 NC_005262.1 + 49822 0.66 0.23365
Target:  5'- aUCgGCCGCGcgauGGagCGCGCgaaugGCCCGGu -3'
miRNA:   3'- aAGgCGGCGCu---CCg-GCGCG-----CGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 56 0.66 0.23365
Target:  5'- aUgUGCCgGgGAGGCCGCG-GCUCGcGAa -3'
miRNA:   3'- aAgGCGG-CgCUCCGGCGCgCGGGC-CU- -5'
24023 5' -67.5 NC_005262.1 + 58896 0.66 0.23365
Target:  5'- -gCUGCCGCGcugcgcgaucAGGCCG-GCGgCCCGa- -3'
miRNA:   3'- aaGGCGGCGC----------UCCGGCgCGC-GGGCcu -5'
24023 5' -67.5 NC_005262.1 + 50416 0.66 0.23365
Target:  5'- --gCGCCGCGgagcgcgaGGGCCGCGUGCaCGu- -3'
miRNA:   3'- aagGCGGCGC--------UCCGGCGCGCGgGCcu -5'
24023 5' -67.5 NC_005262.1 + 46812 0.66 0.228098
Target:  5'- -aCCGaCGUGcAGGcCCGCGCGCUCGc- -3'
miRNA:   3'- aaGGCgGCGC-UCC-GGCGCGCGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 55624 0.66 0.228098
Target:  5'- cUgCGCagcaagaaGCcGGGCCGCGCGCUCGuGGc -3'
miRNA:   3'- aAgGCGg-------CGcUCCGGCGCGCGGGC-CU- -5'
24023 5' -67.5 NC_005262.1 + 16869 0.66 0.222657
Target:  5'- --aUGCagGCGcccGGCCGCGCGCCgGGc -3'
miRNA:   3'- aagGCGg-CGCu--CCGGCGCGCGGgCCu -5'
24023 5' -67.5 NC_005262.1 + 44607 0.66 0.222657
Target:  5'- aUUCCGCucgagCGCGAGaagcCCGCGCGCaaGGc -3'
miRNA:   3'- -AAGGCG-----GCGCUCc---GGCGCGCGggCCu -5'
24023 5' -67.5 NC_005262.1 + 20936 0.66 0.222119
Target:  5'- -aCUGCCugcgucguguagaGCGGGuGCCGCGC-CCCGcGAu -3'
miRNA:   3'- aaGGCGG-------------CGCUC-CGGCGCGcGGGC-CU- -5'
24023 5' -67.5 NC_005262.1 + 47745 0.66 0.217327
Target:  5'- gUgCGCCGCc-GGCCGCGgCGaaCCCGGc -3'
miRNA:   3'- aAgGCGGCGcuCCGGCGC-GC--GGGCCu -5'
24023 5' -67.5 NC_005262.1 + 10653 0.66 0.217327
Target:  5'- cUCCGCgguaCGCuGcGGCUGCGCGCggCCGGu -3'
miRNA:   3'- aAGGCG----GCG-CuCCGGCGCGCG--GGCCu -5'
24023 5' -67.5 NC_005262.1 + 6884 0.66 0.212107
Target:  5'- -gCCgGCCGCGAucgcguuuucGaGCCGCGUGCCCc-- -3'
miRNA:   3'- aaGG-CGGCGCU----------C-CGGCGCGCGGGccu -5'
24023 5' -67.5 NC_005262.1 + 61915 0.66 0.206995
Target:  5'- --aCGCCGCaGGGCUGCGCcgGCUCGa- -3'
miRNA:   3'- aagGCGGCGcUCCGGCGCG--CGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 1138 0.66 0.205483
Target:  5'- -gCCGCUGCGGGcuucgaugcuGCCGCGCgggcuugccauccuGCgCGGAa -3'
miRNA:   3'- aaGGCGGCGCUC----------CGGCGCG--------------CGgGCCU- -5'
24023 5' -67.5 NC_005262.1 + 5144 0.66 0.205483
Target:  5'- -gCCGCCGCG-GGCCugcccgccgaucagGCGCcGgCCGGc -3'
miRNA:   3'- aaGGCGGCGCuCCGG--------------CGCG-CgGGCCu -5'
24023 5' -67.5 NC_005262.1 + 61290 0.66 0.200509
Target:  5'- cUCCGggcugaccuUCGUGAGgucguucucguagcGCCGCGCGCCCGu- -3'
miRNA:   3'- aAGGC---------GGCGCUC--------------CGGCGCGCGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 40392 0.67 0.197576
Target:  5'- gUCUGCCGCGuucgcgcggauucaGCCGCGCGUCgGcGAc -3'
miRNA:   3'- aAGGCGGCGCuc------------CGGCGCGCGGgC-CU- -5'
24023 5' -67.5 NC_005262.1 + 57694 0.67 0.19709
Target:  5'- -gUUGUCGCGAuaccacucaauGGCCGUGCGCCagaggucaucCGGAg -3'
miRNA:   3'- aaGGCGGCGCU-----------CCGGCGCGCGG----------GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.