Results 1 - 20 of 72 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 20936 | 0.66 | 0.222119 |
Target: 5'- -aCUGCCugcgucguguagaGCGGGuGCCGCGC-CCCGcGAu -3' miRNA: 3'- aaGGCGG-------------CGCUC-CGGCGCGcGGGC-CU- -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 49822 | 0.66 | 0.23365 |
Target: 5'- aUCgGCCGCGcgauGGagCGCGCgaaugGCCCGGu -3' miRNA: 3'- aAGgCGGCGCu---CCg-GCGCG-----CGGGCCu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 22317 | 0.66 | 0.23365 |
Target: 5'- -gCCGgCGUG-GGCgGCGCGgCCGuGAg -3' miRNA: 3'- aaGGCgGCGCuCCGgCGCGCgGGC-CU- -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 20673 | 0.66 | 0.23365 |
Target: 5'- -cCUGCgGCGc-GCCGCGCGCugcucgCCGGGc -3' miRNA: 3'- aaGGCGgCGCucCGGCGCGCG------GGCCU- -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 50416 | 0.66 | 0.23365 |
Target: 5'- --gCGCCGCGgagcgcgaGGGCCGCGUGCaCGu- -3' miRNA: 3'- aagGCGGCGC--------UCCGGCGCGCGgGCcu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 58896 | 0.66 | 0.23365 |
Target: 5'- -gCUGCCGCGcugcgcgaucAGGCCG-GCGgCCCGa- -3' miRNA: 3'- aaGGCGGCGC----------UCCGGCgCGC-GGGCcu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 10653 | 0.66 | 0.217327 |
Target: 5'- cUCCGCgguaCGCuGcGGCUGCGCGCggCCGGu -3' miRNA: 3'- aAGGCG----GCG-CuCCGGCGCGCG--GGCCu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 5144 | 0.66 | 0.205483 |
Target: 5'- -gCCGCCGCG-GGCCugcccgccgaucagGCGCcGgCCGGc -3' miRNA: 3'- aaGGCGGCGCuCCGG--------------CGCG-CgGGCCu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 61290 | 0.66 | 0.200509 |
Target: 5'- cUCCGggcugaccuUCGUGAGgucguucucguagcGCCGCGCGCCCGu- -3' miRNA: 3'- aAGGC---------GGCGCUC--------------CGGCGCGCGGGCcu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 56 | 0.66 | 0.23365 |
Target: 5'- aUgUGCCgGgGAGGCCGCG-GCUCGcGAa -3' miRNA: 3'- aAgGCGG-CgCUCCGGCGCgCGGGC-CU- -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 55624 | 0.66 | 0.228098 |
Target: 5'- cUgCGCagcaagaaGCcGGGCCGCGCGCUCGuGGc -3' miRNA: 3'- aAgGCGg-------CGcUCCGGCGCGCGGGC-CU- -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 46812 | 0.66 | 0.228098 |
Target: 5'- -aCCGaCGUGcAGGcCCGCGCGCUCGc- -3' miRNA: 3'- aaGGCgGCGC-UCC-GGCGCGCGGGCcu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 1138 | 0.66 | 0.205483 |
Target: 5'- -gCCGCUGCGGGcuucgaugcuGCCGCGCgggcuugccauccuGCgCGGAa -3' miRNA: 3'- aaGGCGGCGCUC----------CGGCGCG--------------CGgGCCU- -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 61915 | 0.66 | 0.206995 |
Target: 5'- --aCGCCGCaGGGCUGCGCcgGCUCGa- -3' miRNA: 3'- aagGCGGCGcUCCGGCGCG--CGGGCcu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 16869 | 0.66 | 0.222657 |
Target: 5'- --aUGCagGCGcccGGCCGCGCGCCgGGc -3' miRNA: 3'- aagGCGg-CGCu--CCGGCGCGCGGgCCu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 44607 | 0.66 | 0.222657 |
Target: 5'- aUUCCGCucgagCGCGAGaagcCCGCGCGCaaGGc -3' miRNA: 3'- -AAGGCG-----GCGCUCc---GGCGCGCGggCCu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 6884 | 0.66 | 0.212107 |
Target: 5'- -gCCgGCCGCGAucgcguuuucGaGCCGCGUGCCCc-- -3' miRNA: 3'- aaGG-CGGCGCU----------C-CGGCGCGCGGGccu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 47745 | 0.66 | 0.217327 |
Target: 5'- gUgCGCCGCc-GGCCGCGgCGaaCCCGGc -3' miRNA: 3'- aAgGCGGCGcuCCGGCGC-GC--GGGCCu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 35194 | 0.67 | 0.192295 |
Target: 5'- -aCCGCCGCGuGGCCaGCcuaCGUCCGc- -3' miRNA: 3'- aaGGCGGCGCuCCGG-CGc--GCGGGCcu -5' |
|||||||
24023 | 5' | -67.5 | NC_005262.1 | + | 15894 | 0.67 | 0.187602 |
Target: 5'- aUCCGCCGCGugcgcgcgacguGGcGCCGCgauGCGCCgCaGAg -3' miRNA: 3'- aAGGCGGCGC------------UC-CGGCG---CGCGG-GcCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home