miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24023 5' -67.5 NC_005262.1 + 28720 1.05 0.000177
Target:  5'- gUUCCGCCGCGAGGCCGCGCGCCCGGAc -3'
miRNA:   3'- -AAGGCGGCGCUCCGGCGCGCGGGCCU- -5'
24023 5' -67.5 NC_005262.1 + 28251 0.79 0.021547
Target:  5'- -gCCGCCGCGcgcaguuGcGCCGCGCGCUCGGGg -3'
miRNA:   3'- aaGGCGGCGCu------C-CGGCGCGCGGGCCU- -5'
24023 5' -67.5 NC_005262.1 + 5537 0.78 0.026062
Target:  5'- gUUCGCCGCGAGGUCaugcCGCGCCgGGAc -3'
miRNA:   3'- aAGGCGGCGCUCCGGc---GCGCGGgCCU- -5'
24023 5' -67.5 NC_005262.1 + 41180 0.77 0.029846
Target:  5'- -aCCGCCGCGAucGCgUGCGCGCCCGGc -3'
miRNA:   3'- aaGGCGGCGCUc-CG-GCGCGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 55224 0.73 0.070454
Target:  5'- cUUCGUCGCGcAGGCCGCGCucaacaaUCCGGAu -3'
miRNA:   3'- aAGGCGGCGC-UCCGGCGCGc------GGGCCU- -5'
24023 5' -67.5 NC_005262.1 + 59141 0.72 0.078319
Target:  5'- -gCCggGCCGCGucGCCGCGCGCauGGAg -3'
miRNA:   3'- aaGG--CGGCGCucCGGCGCGCGggCCU- -5'
24023 5' -67.5 NC_005262.1 + 43830 0.72 0.084761
Target:  5'- -aCgGCCGCGGgccGGCCGCGCGCggcggugcgCCGGc -3'
miRNA:   3'- aaGgCGGCGCU---CCGGCGCGCG---------GGCCu -5'
24023 5' -67.5 NC_005262.1 + 51264 0.71 0.0891
Target:  5'- -gCCGCCGCGucgucGGCUgccugcuGCGCGCUCGGc -3'
miRNA:   3'- aaGGCGGCGCu----CCGG-------CGCGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 49722 0.71 0.089334
Target:  5'- -gCCGCCgaucGCGAGGCCaccgaGCGCCUGGu -3'
miRNA:   3'- aaGGCGG----CGCUCCGGcg---CGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 12917 0.71 0.091707
Target:  5'- gUUC-CCGCGAGGCCGCGCuccuucuucacGCgCCGGc -3'
miRNA:   3'- aAGGcGGCGCUCCGGCGCG-----------CG-GGCCu -5'
24023 5' -67.5 NC_005262.1 + 3743 0.7 0.101018
Target:  5'- -aCgGCCGCGAGuacaaccgggagaaGCUGCGCGCCCa-- -3'
miRNA:   3'- aaGgCGGCGCUC--------------CGGCGCGCGGGccu -5'
24023 5' -67.5 NC_005262.1 + 46440 0.7 0.101811
Target:  5'- -cCCGCCGCGccGCC-CGCG-CCGGAc -3'
miRNA:   3'- aaGGCGGCGCucCGGcGCGCgGGCCU- -5'
24023 5' -67.5 NC_005262.1 + 12589 0.7 0.104496
Target:  5'- -gCCGCCgGCGAGGCgucgcggaugaGCGCGCCCu-- -3'
miRNA:   3'- aaGGCGG-CGCUCCGg----------CGCGCGGGccu -5'
24023 5' -67.5 NC_005262.1 + 16957 0.7 0.104496
Target:  5'- -cCCGgCGCGcGGCCGgGCGCCUGc- -3'
miRNA:   3'- aaGGCgGCGCuCCGGCgCGCGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 5280 0.7 0.104496
Target:  5'- cUCgGUCGCGccGGCCGCGCccgcGCCCGcGAc -3'
miRNA:   3'- aAGgCGGCGCu-CCGGCGCG----CGGGC-CU- -5'
24023 5' -67.5 NC_005262.1 + 50334 0.7 0.115916
Target:  5'- -cCCGCCGCGcAGGaCGaaGCGCCCGcGAc -3'
miRNA:   3'- aaGGCGGCGC-UCCgGCg-CGCGGGC-CU- -5'
24023 5' -67.5 NC_005262.1 + 50260 0.7 0.118642
Target:  5'- -aCCGCCGCaacGAGGgCGCGCccgcgccggccgaGCCCGuGAc -3'
miRNA:   3'- aaGGCGGCG---CUCCgGCGCG-------------CGGGC-CU- -5'
24023 5' -67.5 NC_005262.1 + 14291 0.7 0.118949
Target:  5'- -cCCGCCGUcAGuGCCGCGUGgaguUCCGGAu -3'
miRNA:   3'- aaGGCGGCGcUC-CGGCGCGC----GGGCCU- -5'
24023 5' -67.5 NC_005262.1 + 50927 0.69 0.122054
Target:  5'- uUUCUGCgCGCGGGauGCCaGCGUGCCCGu- -3'
miRNA:   3'- -AAGGCG-GCGCUC--CGG-CGCGCGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 56437 0.69 0.125235
Target:  5'- aUCUGCuCGCGGGGCaCGC-CGCCCu-- -3'
miRNA:   3'- aAGGCG-GCGCUCCG-GCGcGCGGGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.