miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24023 5' -67.5 NC_005262.1 + 10885 0.67 0.195641
Target:  5'- -aUCGUCGCGgcagcucgcgcagcAGuaCCGCGCGCCCGGc -3'
miRNA:   3'- aaGGCGGCGC--------------UCc-GGCGCGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 35194 0.67 0.192295
Target:  5'- -aCCGCCGCGuGGCCaGCcuaCGUCCGc- -3'
miRNA:   3'- aaGGCGGCGCuCCGG-CGc--GCGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 52920 0.67 0.187602
Target:  5'- aUCCGCuCGaucuaCGAcGGCCuGCGcCGCCUGGGc -3'
miRNA:   3'- aAGGCG-GC-----GCU-CCGG-CGC-GCGGGCCU- -5'
24023 5' -67.5 NC_005262.1 + 15894 0.67 0.187602
Target:  5'- aUCCGCCGCGugcgcgcgacguGGcGCCGCgauGCGCCgCaGAg -3'
miRNA:   3'- aAGGCGGCGC------------UC-CGGCG---CGCGG-GcCU- -5'
24023 5' -67.5 NC_005262.1 + 43921 0.67 0.18301
Target:  5'- -aCCGCCGCGcgcGGCCGgccCGCGgCCGu- -3'
miRNA:   3'- aaGGCGGCGCu--CCGGC---GCGCgGGCcu -5'
24023 5' -67.5 NC_005262.1 + 15584 0.67 0.18301
Target:  5'- -cUCGCCgGUGAGcgaGCCGcCGCGCUCGGu -3'
miRNA:   3'- aaGGCGG-CGCUC---CGGC-GCGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 49609 0.67 0.182556
Target:  5'- cUCgGCCGCGAcGUCGCuaaccagGCGCUCGGu -3'
miRNA:   3'- aAGgCGGCGCUcCGGCG-------CGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 34040 0.67 0.178962
Target:  5'- --aCGCCGCGuuccgggaucgcuuGCCGCGUGCCCGc- -3'
miRNA:   3'- aagGCGGCGCuc------------CGGCGCGCGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 33264 0.67 0.178517
Target:  5'- cUUCCugucgauCCGCGAGGCguaccgcauCGCGCGCacgCCGGGc -3'
miRNA:   3'- -AAGGc------GGCGCUCCG---------GCGCGCG---GGCCU- -5'
24023 5' -67.5 NC_005262.1 + 46526 0.67 0.178517
Target:  5'- gUCCGgCGCG-GGCgGCGCGgCgGGc -3'
miRNA:   3'- aAGGCgGCGCuCCGgCGCGCgGgCCu -5'
24023 5' -67.5 NC_005262.1 + 53711 0.67 0.174123
Target:  5'- -cCCgGCCGCGucgaAGGCCGUGgCGCUCGa- -3'
miRNA:   3'- aaGG-CGGCGC----UCCGGCGC-GCGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 30037 0.67 0.174123
Target:  5'- cUUCGCCGCc--GCC-CGCGUCCGGGu -3'
miRNA:   3'- aAGGCGGCGcucCGGcGCGCGGGCCU- -5'
24023 5' -67.5 NC_005262.1 + 50476 0.67 0.174123
Target:  5'- -aUCGCCGCGcGGuUCGCGuCGCCaCGGu -3'
miRNA:   3'- aaGGCGGCGCuCC-GGCGC-GCGG-GCCu -5'
24023 5' -67.5 NC_005262.1 + 12633 0.67 0.174123
Target:  5'- -gCCGCCGCGAccuGCCGC-CGCaacaUGGAg -3'
miRNA:   3'- aaGGCGGCGCUc--CGGCGcGCGg---GCCU- -5'
24023 5' -67.5 NC_005262.1 + 53784 0.68 0.169826
Target:  5'- --aCGCgGCcGGGUucUGCGCGCCCGGc -3'
miRNA:   3'- aagGCGgCGcUCCG--GCGCGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 36637 0.68 0.169826
Target:  5'- ----uCCGCGAGGaUCGUGCGCCCGa- -3'
miRNA:   3'- aaggcGGCGCUCC-GGCGCGCGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 17166 0.68 0.169826
Target:  5'- ---gGCCgGCaAGGCCGCGCGCgaGGAc -3'
miRNA:   3'- aaggCGG-CGcUCCGGCGCGCGggCCU- -5'
24023 5' -67.5 NC_005262.1 + 10698 0.68 0.169826
Target:  5'- aUgCGCagauCGAGGCCGCGCGCaCgCGGc -3'
miRNA:   3'- aAgGCGgc--GCUCCGGCGCGCG-G-GCCu -5'
24023 5' -67.5 NC_005262.1 + 17639 0.68 0.168555
Target:  5'- -gCCGCCGCGGcugccgccucgcgcGcGaCCGCGUGCCCGu- -3'
miRNA:   3'- aaGGCGGCGCU--------------C-C-GGCGCGCGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 61380 0.68 0.165624
Target:  5'- aUCCGaccCCGCGAGGCUGgcCGCGCCg--- -3'
miRNA:   3'- aAGGC---GGCGCUCCGGC--GCGCGGgccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.