miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24023 5' -67.5 NC_005262.1 + 56 0.66 0.23365
Target:  5'- aUgUGCCgGgGAGGCCGCG-GCUCGcGAa -3'
miRNA:   3'- aAgGCGG-CgCUCCGGCGCgCGGGC-CU- -5'
24023 5' -67.5 NC_005262.1 + 1138 0.66 0.205483
Target:  5'- -gCCGCUGCGGGcuucgaugcuGCCGCGCgggcuugccauccuGCgCGGAa -3'
miRNA:   3'- aaGGCGGCGCUC----------CGGCGCG--------------CGgGCCU- -5'
24023 5' -67.5 NC_005262.1 + 3743 0.7 0.101018
Target:  5'- -aCgGCCGCGAGuacaaccgggagaaGCUGCGCGCCCa-- -3'
miRNA:   3'- aaGgCGGCGCUC--------------CGGCGCGCGGGccu -5'
24023 5' -67.5 NC_005262.1 + 5071 0.68 0.148225
Target:  5'- -cCCGCgGCGGcggcgcgugcgaccGGCUcggcgguGCGCGCCCGGu -3'
miRNA:   3'- aaGGCGgCGCU--------------CCGG-------CGCGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 5144 0.66 0.205483
Target:  5'- -gCCGCCGCG-GGCCugcccgccgaucagGCGCcGgCCGGc -3'
miRNA:   3'- aaGGCGGCGCuCCGG--------------CGCG-CgGGCCu -5'
24023 5' -67.5 NC_005262.1 + 5280 0.7 0.104496
Target:  5'- cUCgGUCGCGccGGCCGCGCccgcGCCCGcGAc -3'
miRNA:   3'- aAGgCGGCGCu-CCGGCGCG----CGGGC-CU- -5'
24023 5' -67.5 NC_005262.1 + 5537 0.78 0.026062
Target:  5'- gUUCGCCGCGAGGUCaugcCGCGCCgGGAc -3'
miRNA:   3'- aAGGCGGCGCUCCGGc---GCGCGGgCCU- -5'
24023 5' -67.5 NC_005262.1 + 6884 0.66 0.212107
Target:  5'- -gCCgGCCGCGAucgcguuuucGaGCCGCGUGCCCc-- -3'
miRNA:   3'- aaGG-CGGCGCU----------C-CGGCGCGCGGGccu -5'
24023 5' -67.5 NC_005262.1 + 10549 0.68 0.153961
Target:  5'- -gCCGaCGCGAccGGCCGCGCGCagccgcagcguaccgCGGAg -3'
miRNA:   3'- aaGGCgGCGCU--CCGGCGCGCGg--------------GCCU- -5'
24023 5' -67.5 NC_005262.1 + 10653 0.66 0.217327
Target:  5'- cUCCGCgguaCGCuGcGGCUGCGCGCggCCGGu -3'
miRNA:   3'- aAGGCG----GCG-CuCCGGCGCGCG--GGCCu -5'
24023 5' -67.5 NC_005262.1 + 10698 0.68 0.169826
Target:  5'- aUgCGCagauCGAGGCCGCGCGCaCgCGGc -3'
miRNA:   3'- aAgGCGgc--GCUCCGGCGCGCG-G-GCCu -5'
24023 5' -67.5 NC_005262.1 + 10885 0.67 0.195641
Target:  5'- -aUCGUCGCGgcagcucgcgcagcAGuaCCGCGCGCCCGGc -3'
miRNA:   3'- aaGGCGGCGC--------------UCc-GGCGCGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 12589 0.7 0.104496
Target:  5'- -gCCGCCgGCGAGGCgucgcggaugaGCGCGCCCu-- -3'
miRNA:   3'- aaGGCGG-CGCUCCGg----------CGCGCGGGccu -5'
24023 5' -67.5 NC_005262.1 + 12633 0.67 0.174123
Target:  5'- -gCCGCCGCGAccuGCCGC-CGCaacaUGGAg -3'
miRNA:   3'- aaGGCGGCGCUc--CGGCGcGCGg---GCCU- -5'
24023 5' -67.5 NC_005262.1 + 12741 0.68 0.157498
Target:  5'- gUUCGCCGCGc-GCCGCGCGCgCu-- -3'
miRNA:   3'- aAGGCGGCGCucCGGCGCGCGgGccu -5'
24023 5' -67.5 NC_005262.1 + 12917 0.71 0.091707
Target:  5'- gUUC-CCGCGAGGCCGCGCuccuucuucacGCgCCGGc -3'
miRNA:   3'- aAGGcGGCGCUCCGGCGCG-----------CG-GGCCu -5'
24023 5' -67.5 NC_005262.1 + 13144 0.68 0.157498
Target:  5'- gUCCGCCGCGcGcGCUGCGCGgCacaacuccuuggCGGGa -3'
miRNA:   3'- aAGGCGGCGCuC-CGGCGCGCgG------------GCCU- -5'
24023 5' -67.5 NC_005262.1 + 14291 0.7 0.118949
Target:  5'- -cCCGCCGUcAGuGCCGCGUGgaguUCCGGAu -3'
miRNA:   3'- aaGGCGGCGcUC-CGGCGCGC----GGGCCU- -5'
24023 5' -67.5 NC_005262.1 + 15584 0.67 0.18301
Target:  5'- -cUCGCCgGUGAGcgaGCCGcCGCGCUCGGu -3'
miRNA:   3'- aaGGCGG-CGCUC---CGGC-GCGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 15894 0.67 0.187602
Target:  5'- aUCCGCCGCGugcgcgcgacguGGcGCCGCgauGCGCCgCaGAg -3'
miRNA:   3'- aAGGCGGCGC------------UC-CGGCG---CGCGG-GcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.