miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24023 5' -67.5 NC_005262.1 + 15894 0.67 0.187602
Target:  5'- aUCCGCCGCGugcgcgcgacguGGcGCCGCgauGCGCCgCaGAg -3'
miRNA:   3'- aAGGCGGCGC------------UC-CGGCG---CGCGG-GcCU- -5'
24023 5' -67.5 NC_005262.1 + 52703 0.68 0.153572
Target:  5'- -gCCGCCGgccgacgccggaCGAGGCCGCGCuGCUgacgaaguucaCGGGc -3'
miRNA:   3'- aaGGCGGC------------GCUCCGGCGCG-CGG-----------GCCU- -5'
24023 5' -67.5 NC_005262.1 + 10549 0.68 0.153961
Target:  5'- -gCCGaCGCGAccGGCCGCGCGCagccgcagcguaccgCGGAg -3'
miRNA:   3'- aaGGCgGCGCU--CCGGCGCGCGg--------------GCCU- -5'
24023 5' -67.5 NC_005262.1 + 13144 0.68 0.157498
Target:  5'- gUCCGCCGCGcGcGCUGCGCGgCacaacuccuuggCGGGa -3'
miRNA:   3'- aAGGCGGCGCuC-CGGCGCGCgG------------GCCU- -5'
24023 5' -67.5 NC_005262.1 + 17166 0.68 0.169826
Target:  5'- ---gGCCgGCaAGGCCGCGCGCgaGGAc -3'
miRNA:   3'- aaggCGG-CGcUCCGGCGCGCGggCCU- -5'
24023 5' -67.5 NC_005262.1 + 10698 0.68 0.169826
Target:  5'- aUgCGCagauCGAGGCCGCGCGCaCgCGGc -3'
miRNA:   3'- aAgGCGgc--GCUCCGGCGCGCG-G-GCCu -5'
24023 5' -67.5 NC_005262.1 + 53711 0.67 0.174123
Target:  5'- -cCCgGCCGCGucgaAGGCCGUGgCGCUCGa- -3'
miRNA:   3'- aaGG-CGGCGC----UCCGGCGC-GCGGGCcu -5'
24023 5' -67.5 NC_005262.1 + 33264 0.67 0.178517
Target:  5'- cUUCCugucgauCCGCGAGGCguaccgcauCGCGCGCacgCCGGGc -3'
miRNA:   3'- -AAGGc------GGCGCUCCG---------GCGCGCG---GGCCU- -5'
24023 5' -67.5 NC_005262.1 + 49609 0.67 0.182556
Target:  5'- cUCgGCCGCGAcGUCGCuaaccagGCGCUCGGu -3'
miRNA:   3'- aAGgCGGCGCUcCGGCG-------CGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 5071 0.68 0.148225
Target:  5'- -cCCGCgGCGGcggcgcgugcgaccGGCUcggcgguGCGCGCCCGGu -3'
miRNA:   3'- aaGGCGgCGCU--------------CCGG-------CGCGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 36718 0.69 0.135245
Target:  5'- uUUCCGuuGUgGGGGCUG-GCGCCgCGGGc -3'
miRNA:   3'- -AAGGCggCG-CUCCGGCgCGCGG-GCCU- -5'
24023 5' -67.5 NC_005262.1 + 49242 0.69 0.127181
Target:  5'- gUCCGCgCGCGAGGuCCGCGaccagaucaacgaGCugaagCCGGAa -3'
miRNA:   3'- aAGGCG-GCGCUCC-GGCGCg------------CG-----GGCCU- -5'
24023 5' -67.5 NC_005262.1 + 41180 0.77 0.029846
Target:  5'- -aCCGCCGCGAucGCgUGCGCGCCCGGc -3'
miRNA:   3'- aaGGCGGCGCUc-CG-GCGCGCGGGCCu -5'
24023 5' -67.5 NC_005262.1 + 55224 0.73 0.070454
Target:  5'- cUUCGUCGCGcAGGCCGCGCucaacaaUCCGGAu -3'
miRNA:   3'- aAGGCGGCGC-UCCGGCGCGc------GGGCCU- -5'
24023 5' -67.5 NC_005262.1 + 59141 0.72 0.078319
Target:  5'- -gCCggGCCGCGucGCCGCGCGCauGGAg -3'
miRNA:   3'- aaGG--CGGCGCucCGGCGCGCGggCCU- -5'
24023 5' -67.5 NC_005262.1 + 43830 0.72 0.084761
Target:  5'- -aCgGCCGCGGgccGGCCGCGCGCggcggugcgCCGGc -3'
miRNA:   3'- aaGgCGGCGCU---CCGGCGCGCG---------GGCCu -5'
24023 5' -67.5 NC_005262.1 + 46440 0.7 0.101811
Target:  5'- -cCCGCCGCGccGCC-CGCG-CCGGAc -3'
miRNA:   3'- aaGGCGGCGCucCGGcGCGCgGGCCU- -5'
24023 5' -67.5 NC_005262.1 + 12589 0.7 0.104496
Target:  5'- -gCCGCCgGCGAGGCgucgcggaugaGCGCGCCCu-- -3'
miRNA:   3'- aaGGCGG-CGCUCCGg----------CGCGCGGGccu -5'
24023 5' -67.5 NC_005262.1 + 50334 0.7 0.115916
Target:  5'- -cCCGCCGCGcAGGaCGaaGCGCCCGcGAc -3'
miRNA:   3'- aaGGCGGCGC-UCCgGCg-CGCGGGC-CU- -5'
24023 5' -67.5 NC_005262.1 + 50260 0.7 0.118642
Target:  5'- -aCCGCCGCaacGAGGgCGCGCccgcgccggccgaGCCCGuGAc -3'
miRNA:   3'- aaGGCGGCG---CUCCgGCGCG-------------CGGGC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.