miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 24175 0.66 0.817556
Target:  5'- cCUGCAcguuccccggcgaguUCACGcccgaggcGGCAGCCGCGacGCugcGCCg -3'
miRNA:   3'- -GGCGU---------------AGUGC--------UUGUCGGCGC--CGu--UGG- -5'
24024 3' -54.9 NC_005262.1 + 3084 0.66 0.813892
Target:  5'- gCGcCGUCAuCGGuuuGCCGCaGUAGCCg -3'
miRNA:   3'- gGC-GUAGU-GCUuguCGGCGcCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 2529 0.66 0.813892
Target:  5'- aCCGUAagACcGGCgAGUgGCaGGCAGCCg -3'
miRNA:   3'- -GGCGUagUGcUUG-UCGgCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 28681 0.66 0.813892
Target:  5'- gCGCAUgaaGCGGAuCAcGCCGUagGGCAuGCCg -3'
miRNA:   3'- gGCGUAg--UGCUU-GU-CGGCG--CCGU-UGG- -5'
24024 3' -54.9 NC_005262.1 + 48424 0.66 0.813892
Target:  5'- cCCGaa-CACG-ACGGaCgGCGGCAugACCa -3'
miRNA:   3'- -GGCguaGUGCuUGUC-GgCGCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 48912 0.66 0.813892
Target:  5'- aUCGCcUCaACGAACGGCuUGCcGaCGACCg -3'
miRNA:   3'- -GGCGuAG-UGCUUGUCG-GCGcC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 41267 0.66 0.813892
Target:  5'- gCgGCgAUCACGcagauuCGGCCGCgcgugGGCGACa -3'
miRNA:   3'- -GgCG-UAGUGCuu----GUCGGCG-----CCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 42055 0.66 0.813892
Target:  5'- gCgGUGUCAgGcAACAGgCGCGGCAc-- -3'
miRNA:   3'- -GgCGUAGUgC-UUGUCgGCGCCGUugg -5'
24024 3' -54.9 NC_005262.1 + 49866 0.66 0.813892
Target:  5'- -gGCGUC-CGGcGCGGCaGCGGCcggAGCCu -3'
miRNA:   3'- ggCGUAGuGCU-UGUCGgCGCCG---UUGG- -5'
24024 3' -54.9 NC_005262.1 + 54650 0.66 0.813892
Target:  5'- gCGCcUCGCucGCGaaCGCGGCGACg -3'
miRNA:   3'- gGCGuAGUGcuUGUcgGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 1418 0.66 0.813892
Target:  5'- uCCGC--CACGAccGCGGCCGCuucgucgaGcGCAGCg -3'
miRNA:   3'- -GGCGuaGUGCU--UGUCGGCG--------C-CGUUGg -5'
24024 3' -54.9 NC_005262.1 + 44420 0.66 0.813892
Target:  5'- gCCGCA-CACGAugGcgaccucguGUCGCucGGCAugCu -3'
miRNA:   3'- -GGCGUaGUGCUugU---------CGGCG--CCGUugG- -5'
24024 3' -54.9 NC_005262.1 + 59388 0.66 0.813892
Target:  5'- gCGC-UCGCGcAGCAGgCGC-GCGACa -3'
miRNA:   3'- gGCGuAGUGC-UUGUCgGCGcCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 55270 0.66 0.813892
Target:  5'- aCGCAcUCgGCGuuCGGCCGCaucGGCAuguCCg -3'
miRNA:   3'- gGCGU-AG-UGCuuGUCGGCG---CCGUu--GG- -5'
24024 3' -54.9 NC_005262.1 + 58611 0.66 0.813892
Target:  5'- gUGCAgcagCACGGGCAGg-GCGGuCGACUg -3'
miRNA:   3'- gGCGUa---GUGCUUGUCggCGCC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 56955 0.66 0.813892
Target:  5'- uCCGCGcgggcgaguUCGCGGGC-GUgGuCGGCAagACCg -3'
miRNA:   3'- -GGCGU---------AGUGCUUGuCGgC-GCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 12117 0.66 0.813892
Target:  5'- gCCGCcgugcgCGCGAGCAgaucGCCGCgcuGGagAGCCa -3'
miRNA:   3'- -GGCGua----GUGCUUGU----CGGCG---CCg-UUGG- -5'
24024 3' -54.9 NC_005262.1 + 60631 0.66 0.813892
Target:  5'- gCGCAcgcUgGCGAGCGGCgagcacCGCgGGCAAgCa -3'
miRNA:   3'- gGCGU---AgUGCUUGUCG------GCG-CCGUUgG- -5'
24024 3' -54.9 NC_005262.1 + 23526 0.66 0.812972
Target:  5'- gCGCcaGUCGuCGGACGGCucgaugaCGCGGCucauGCUg -3'
miRNA:   3'- gGCG--UAGU-GCUUGUCG-------GCGCCGu---UGG- -5'
24024 3' -54.9 NC_005262.1 + 12813 0.66 0.81205
Target:  5'- gCGCAgccggCGCGugaagaaggagcGCGGCCucGCGGgAACCg -3'
miRNA:   3'- gGCGUa----GUGCu-----------UGUCGG--CGCCgUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.