miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 62957 0.66 0.79419
Target:  5'- gCGCGUCGCuucCGGCCgacacGCGGCucuaucaGGCCg -3'
miRNA:   3'- gGCGUAGUGcuuGUCGG-----CGCCG-------UUGG- -5'
24024 3' -54.9 NC_005262.1 + 11152 0.66 0.78552
Target:  5'- uCCgGUcgCACGGGCGGCCcuGCGaCAACg -3'
miRNA:   3'- -GG-CGuaGUGCUUGUCGG--CGCcGUUGg -5'
24024 3' -54.9 NC_005262.1 + 42569 0.66 0.803668
Target:  5'- gCCGCuucccUCGCucgaaugGAACGcGCCGCcGGaCGACCu -3'
miRNA:   3'- -GGCGu----AGUG-------CUUGU-CGGCG-CC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 55406 0.66 0.78552
Target:  5'- gCCGCAU--CGAGCAGCUcgaGCGcCGGCUg -3'
miRNA:   3'- -GGCGUAguGCUUGUCGG---CGCcGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 29780 0.66 0.78552
Target:  5'- gCGUAgugC-CGGACGG-CGCGGCAcCCc -3'
miRNA:   3'- gGCGUa--GuGCUUGUCgGCGCCGUuGG- -5'
24024 3' -54.9 NC_005262.1 + 1529 0.66 0.795145
Target:  5'- aCGUAUUGCguGAACAGCgccaGCGuugcGCGACCa -3'
miRNA:   3'- gGCGUAGUG--CUUGUCGg---CGC----CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 41988 0.66 0.795145
Target:  5'- aCCGCcgCgcagaacgcgACGAACGcCCGCcucgaaucgGGCGGCCu -3'
miRNA:   3'- -GGCGuaG----------UGCUUGUcGGCG---------CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 49706 0.66 0.78552
Target:  5'- aCCGCGacggCGugcCGGGCGGCgaacCGGCGGCCg -3'
miRNA:   3'- -GGCGUa---GU---GCUUGUCGgc--GCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 57225 0.66 0.795145
Target:  5'- gCgGCAUCGCGAcGCGcGCCGCcaaucaGGUgaacAACCu -3'
miRNA:   3'- -GgCGUAGUGCU-UGU-CGGCG------CCG----UUGG- -5'
24024 3' -54.9 NC_005262.1 + 15898 0.66 0.78552
Target:  5'- gCCGCGUgCGCGcGACGuggcGCCGCGauGC-GCCg -3'
miRNA:   3'- -GGCGUA-GUGC-UUGU----CGGCGC--CGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 54481 0.66 0.775741
Target:  5'- gCUGC-UCGCGGuGCAGCCGaagccgcugGGCccGACCg -3'
miRNA:   3'- -GGCGuAGUGCU-UGUCGGCg--------CCG--UUGG- -5'
24024 3' -54.9 NC_005262.1 + 32714 0.66 0.795145
Target:  5'- gCGaCAUCAuCGAGCucggcguGCUGCcGGcCGACCa -3'
miRNA:   3'- gGC-GUAGU-GCUUGu------CGGCG-CC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 20719 0.66 0.795145
Target:  5'- gCC-CAUCACGGuCGcGUCGCucGGCAGCUc -3'
miRNA:   3'- -GGcGUAGUGCUuGU-CGGCG--CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 47607 0.66 0.795145
Target:  5'- aCCGCAUgaagaACGAucCGGgcuucUCGCGGCuGCCg -3'
miRNA:   3'- -GGCGUAg----UGCUu-GUC-----GGCGCCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 35155 0.66 0.804606
Target:  5'- aCCGCcgAUC-CGGGCGacGCUGgCGGCAAUg -3'
miRNA:   3'- -GGCG--UAGuGCUUGU--CGGC-GCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 13482 0.66 0.784549
Target:  5'- gCGCGUCGCGcGCuacucGCUggcgaaggcgaagGCGGCGGCa -3'
miRNA:   3'- gGCGUAGUGCuUGu----CGG-------------CGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 17045 0.66 0.795145
Target:  5'- -aGCAgcucCGCGAGCucGUCGCGcGCAcggcGCCg -3'
miRNA:   3'- ggCGUa---GUGCUUGu-CGGCGC-CGU----UGG- -5'
24024 3' -54.9 NC_005262.1 + 22499 0.66 0.804606
Target:  5'- -gGCG-CGCGAGCGGaucgcgaaGCGGCAGuCCc -3'
miRNA:   3'- ggCGUaGUGCUUGUCgg------CGCCGUU-GG- -5'
24024 3' -54.9 NC_005262.1 + 12813 0.66 0.81205
Target:  5'- gCGCAgccggCGCGugaagaaggagcGCGGCCucGCGGgAACCg -3'
miRNA:   3'- gGCGUa----GUGCu-----------UGUCGG--CGCCgUUGG- -5'
24024 3' -54.9 NC_005262.1 + 43379 0.66 0.78552
Target:  5'- -aGCAUCuucggcgauGCGAGCAuCgGCGGCGAgCu -3'
miRNA:   3'- ggCGUAG---------UGCUUGUcGgCGCCGUUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.