miRNA display CGI


Results 21 - 40 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 22499 0.66 0.804606
Target:  5'- -gGCG-CGCGAGCGGaucgcgaaGCGGCAGuCCc -3'
miRNA:   3'- ggCGUaGUGCUUGUCgg------CGCCGUU-GG- -5'
24024 3' -54.9 NC_005262.1 + 15898 0.66 0.78552
Target:  5'- gCCGCGUgCGCGcGACGuggcGCCGCGauGC-GCCg -3'
miRNA:   3'- -GGCGUA-GUGC-UUGU----CGGCGC--CGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 56955 0.66 0.813892
Target:  5'- uCCGCGcgggcgaguUCGCGGGC-GUgGuCGGCAagACCg -3'
miRNA:   3'- -GGCGU---------AGUGCUUGuCGgC-GCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 12117 0.66 0.813892
Target:  5'- gCCGCcgugcgCGCGAGCAgaucGCCGCgcuGGagAGCCa -3'
miRNA:   3'- -GGCGua----GUGCUUGU----CGGCG---CCg-UUGG- -5'
24024 3' -54.9 NC_005262.1 + 2529 0.66 0.813892
Target:  5'- aCCGUAagACcGGCgAGUgGCaGGCAGCCg -3'
miRNA:   3'- -GGCGUagUGcUUG-UCGgCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 44420 0.66 0.813892
Target:  5'- gCCGCA-CACGAugGcgaccucguGUCGCucGGCAugCu -3'
miRNA:   3'- -GGCGUaGUGCUugU---------CGGCG--CCGUugG- -5'
24024 3' -54.9 NC_005262.1 + 55270 0.66 0.813892
Target:  5'- aCGCAcUCgGCGuuCGGCCGCaucGGCAuguCCg -3'
miRNA:   3'- gGCGU-AG-UGCuuGUCGGCG---CCGUu--GG- -5'
24024 3' -54.9 NC_005262.1 + 42569 0.66 0.803668
Target:  5'- gCCGCuucccUCGCucgaaugGAACGcGCCGCcGGaCGACCu -3'
miRNA:   3'- -GGCGu----AGUG-------CUUGU-CGGCG-CC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 49866 0.66 0.813892
Target:  5'- -gGCGUC-CGGcGCGGCaGCGGCcggAGCCu -3'
miRNA:   3'- ggCGUAGuGCU-UGUCGgCGCCG---UUGG- -5'
24024 3' -54.9 NC_005262.1 + 41988 0.66 0.795145
Target:  5'- aCCGCcgCgcagaacgcgACGAACGcCCGCcucgaaucgGGCGGCCu -3'
miRNA:   3'- -GGCGuaG----------UGCUUGUcGGCG---------CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 28681 0.66 0.813892
Target:  5'- gCGCAUgaaGCGGAuCAcGCCGUagGGCAuGCCg -3'
miRNA:   3'- gGCGUAg--UGCUU-GU-CGGCG--CCGU-UGG- -5'
24024 3' -54.9 NC_005262.1 + 57225 0.66 0.795145
Target:  5'- gCgGCAUCGCGAcGCGcGCCGCcaaucaGGUgaacAACCu -3'
miRNA:   3'- -GgCGUAGUGCU-UGU-CGGCG------CCG----UUGG- -5'
24024 3' -54.9 NC_005262.1 + 42055 0.66 0.813892
Target:  5'- gCgGUGUCAgGcAACAGgCGCGGCAc-- -3'
miRNA:   3'- -GgCGUAGUgC-UUGUCgGCGCCGUugg -5'
24024 3' -54.9 NC_005262.1 + 60631 0.66 0.813892
Target:  5'- gCGCAcgcUgGCGAGCGGCgagcacCGCgGGCAAgCa -3'
miRNA:   3'- gGCGU---AgUGCUUGUCG------GCG-CCGUUgG- -5'
24024 3' -54.9 NC_005262.1 + 47607 0.66 0.795145
Target:  5'- aCCGCAUgaagaACGAucCGGgcuucUCGCGGCuGCCg -3'
miRNA:   3'- -GGCGUAg----UGCUu-GUC-----GGCGCCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 29780 0.66 0.78552
Target:  5'- gCGUAgugC-CGGACGG-CGCGGCAcCCc -3'
miRNA:   3'- gGCGUa--GuGCUUGUCgGCGCCGUuGG- -5'
24024 3' -54.9 NC_005262.1 + 24175 0.66 0.817556
Target:  5'- cCUGCAcguuccccggcgaguUCACGcccgaggcGGCAGCCGCGacGCugcGCCg -3'
miRNA:   3'- -GGCGU---------------AGUGC--------UUGUCGGCGC--CGu--UGG- -5'
24024 3' -54.9 NC_005262.1 + 10897 0.66 0.804606
Target:  5'- gCGCugGUCGUGAuc-GUCGCGGCAGCUc -3'
miRNA:   3'- gGCG--UAGUGCUuguCGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 59388 0.66 0.813892
Target:  5'- gCGC-UCGCGcAGCAGgCGC-GCGACa -3'
miRNA:   3'- gGCGuAGUGC-UUGUCgGCGcCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 1418 0.66 0.813892
Target:  5'- uCCGC--CACGAccGCGGCCGCuucgucgaGcGCAGCg -3'
miRNA:   3'- -GGCGuaGUGCU--UGUCGGCG--------C-CGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.