miRNA display CGI


Results 41 - 60 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 15898 0.66 0.78552
Target:  5'- gCCGCGUgCGCGcGACGuggcGCCGCGauGC-GCCg -3'
miRNA:   3'- -GGCGUA-GUGC-UUGU----CGGCGC--CGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 51609 0.66 0.78552
Target:  5'- gCCGUGUUGCGcACGgucgucucGCCGuuGCGGCCg -3'
miRNA:   3'- -GGCGUAGUGCuUGU--------CGGCgcCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 55406 0.66 0.78552
Target:  5'- gCCGCAU--CGAGCAGCUcgaGCGcCGGCUg -3'
miRNA:   3'- -GGCGUAguGCUUGUCGG---CGCcGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 20719 0.66 0.795145
Target:  5'- gCC-CAUCACGGuCGcGUCGCucGGCAGCUc -3'
miRNA:   3'- -GGcGUAGUGCUuGU-CGGCG--CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 51927 0.66 0.78552
Target:  5'- gCCGCGcuucagcacuUCGCGAcguCGGCCGCGcugaagucGUcGCCg -3'
miRNA:   3'- -GGCGU----------AGUGCUu--GUCGGCGC--------CGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 17045 0.66 0.795145
Target:  5'- -aGCAgcucCGCGAGCucGUCGCGcGCAcggcGCCg -3'
miRNA:   3'- ggCGUa---GUGCUUGu-CGGCGC-CGU----UGG- -5'
24024 3' -54.9 NC_005262.1 + 63392 0.66 0.793233
Target:  5'- gCGCGUguucCACGucgacgccgagccAGCAGCCggccgucaagcagGCGGCGGCUg -3'
miRNA:   3'- gGCGUA----GUGC-------------UUGUCGG-------------CGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 45216 0.66 0.78552
Target:  5'- gCGCAcguUCugGcgcGCGGUguuCGCGGCAcccGCCg -3'
miRNA:   3'- gGCGU---AGugCu--UGUCG---GCGCCGU---UGG- -5'
24024 3' -54.9 NC_005262.1 + 13482 0.66 0.784549
Target:  5'- gCGCGUCGCGcGCuacucGCUggcgaaggcgaagGCGGCGGCa -3'
miRNA:   3'- gGCGUAGUGCuUGu----CGG-------------CGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 43379 0.66 0.78552
Target:  5'- -aGCAUCuucggcgauGCGAGCAuCgGCGGCGAgCu -3'
miRNA:   3'- ggCGUAG---------UGCUUGUcGgCGCCGUUgG- -5'
24024 3' -54.9 NC_005262.1 + 54481 0.66 0.775741
Target:  5'- gCUGC-UCGCGGuGCAGCCGaagccgcugGGCccGACCg -3'
miRNA:   3'- -GGCGuAGUGCU-UGUCGGCg--------CCG--UUGG- -5'
24024 3' -54.9 NC_005262.1 + 62871 0.66 0.78552
Target:  5'- uCCGCuuucggCGCGAAUcccUCGCuGGCGACCc -3'
miRNA:   3'- -GGCGua----GUGCUUGuc-GGCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 49048 0.66 0.78552
Target:  5'- cCUGCAUCu---GCGGCgucaUGCuGGCGACCa -3'
miRNA:   3'- -GGCGUAGugcuUGUCG----GCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 41988 0.66 0.795145
Target:  5'- aCCGCcgCgcagaacgcgACGAACGcCCGCcucgaaucgGGCGGCCu -3'
miRNA:   3'- -GGCGuaG----------UGCUUGUcGGCG---------CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 49866 0.66 0.813892
Target:  5'- -gGCGUC-CGGcGCGGCaGCGGCcggAGCCu -3'
miRNA:   3'- ggCGUAGuGCU-UGUCGgCGCCG---UUGG- -5'
24024 3' -54.9 NC_005262.1 + 57225 0.66 0.795145
Target:  5'- gCgGCAUCGCGAcGCGcGCCGCcaaucaGGUgaacAACCu -3'
miRNA:   3'- -GgCGUAGUGCU-UGU-CGGCG------CCG----UUGG- -5'
24024 3' -54.9 NC_005262.1 + 48424 0.66 0.813892
Target:  5'- cCCGaa-CACG-ACGGaCgGCGGCAugACCa -3'
miRNA:   3'- -GGCguaGUGCuUGUC-GgCGCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 12414 0.66 0.795145
Target:  5'- gCCGCcgCGC-----GCUGCGGCAcgaGCCg -3'
miRNA:   3'- -GGCGuaGUGcuuguCGGCGCCGU---UGG- -5'
24024 3' -54.9 NC_005262.1 + 24775 0.66 0.801786
Target:  5'- uCCGCgAUCAUGuggcucaucuucaucCGGCCGUaGCGGCCc -3'
miRNA:   3'- -GGCG-UAGUGCuu-------------GUCGGCGcCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 49706 0.66 0.78552
Target:  5'- aCCGCGacggCGugcCGGGCGGCgaacCGGCGGCCg -3'
miRNA:   3'- -GGCGUa---GU---GCUUGUCGgc--GCCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.