Results 21 - 40 of 364 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24024 | 3' | -54.9 | NC_005262.1 | + | 5179 | 0.77 | 0.244209 |
Target: 5'- gCCgGCGUCGCGGgcGCGGgCGCGGCcggcgcGACCg -3' miRNA: 3'- -GG-CGUAGUGCU--UGUCgGCGCCG------UUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 52471 | 0.77 | 0.231438 |
Target: 5'- cCCGCAgUACGAggaGCAGCCGCugaagcggacgcaGGCGAUCa -3' miRNA: 3'- -GGCGUaGUGCU---UGUCGGCG-------------CCGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 51453 | 0.77 | 0.238056 |
Target: 5'- gCCgGCGUCGCGGACGG-CGCGGU-GCCg -3' miRNA: 3'- -GG-CGUAGUGCUUGUCgGCGCCGuUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 58685 | 0.77 | 0.232033 |
Target: 5'- cCCGCGUUGCGAGCgcgcaacaAGCUgGCGGCAugCc -3' miRNA: 3'- -GGCGUAGUGCUUG--------UCGG-CGCCGUugG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 47735 | 0.76 | 0.256912 |
Target: 5'- cCUGUAUCugGugcgccgcCGGCCGCGGCgAACCc -3' miRNA: 3'- -GGCGUAGugCuu------GUCGGCGCCG-UUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 45390 | 0.76 | 0.283932 |
Target: 5'- -aGCAUCugGGcggcGCAGCaGCaGGCAGCCg -3' miRNA: 3'- ggCGUAGugCU----UGUCGgCG-CCGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 4766 | 0.76 | 0.276973 |
Target: 5'- gCCGCggCcCGAucCGGCCGCGGCAugGCUg -3' miRNA: 3'- -GGCGuaGuGCUu-GUCGGCGCCGU--UGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 25533 | 0.76 | 0.262802 |
Target: 5'- uCCGCGUCGCGAcguccguGC-GCgGCGGCAcgauccACCg -3' miRNA: 3'- -GGCGUAGUGCU-------UGuCGgCGCCGU------UGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 20576 | 0.76 | 0.27015 |
Target: 5'- -aGCAgcccgGCGAGCAGCgCGCGGCGcGCCg -3' miRNA: 3'- ggCGUag---UGCUUGUCG-GCGCCGU-UGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 17651 | 0.75 | 0.291029 |
Target: 5'- uCgGCuUCGCGcGCcGCCGCGGCuGCCg -3' miRNA: 3'- -GgCGuAGUGCuUGuCGGCGCCGuUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 55379 | 0.75 | 0.320802 |
Target: 5'- gCCGCGuacUCGuCGGACAuGCCGauGCGGCCg -3' miRNA: 3'- -GGCGU---AGU-GCUUGU-CGGCgcCGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 38048 | 0.75 | 0.31315 |
Target: 5'- uCgGCAUCACGAcgaacggcACGGCCGCuGGCGcgAUCu -3' miRNA: 3'- -GgCGUAGUGCU--------UGUCGGCG-CCGU--UGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 43815 | 0.75 | 0.298264 |
Target: 5'- -gGCgAUCGCGGcgacACGGCCGCGGgcCGGCCg -3' miRNA: 3'- ggCG-UAGUGCU----UGUCGGCGCC--GUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 57445 | 0.75 | 0.328593 |
Target: 5'- aCCGUc-CGCGGAU-GCCGCGGCGGCg -3' miRNA: 3'- -GGCGuaGUGCUUGuCGGCGCCGUUGg -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 63068 | 0.75 | 0.31315 |
Target: 5'- aCGuCAUCGCGGGCGaguauGCgGCGGCGugCa -3' miRNA: 3'- gGC-GUAGUGCUUGU-----CGgCGCCGUugG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 58899 | 0.75 | 0.31315 |
Target: 5'- gCCGCGcugCGCGAucaGGCCgGCGGCccGACCg -3' miRNA: 3'- -GGCGUa--GUGCUug-UCGG-CGCCG--UUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 45777 | 0.75 | 0.298264 |
Target: 5'- uCgGCAUCgcgGCGAAgGGCgGCGGCGugCu -3' miRNA: 3'- -GgCGUAG---UGCUUgUCGgCGCCGUugG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 24471 | 0.75 | 0.305638 |
Target: 5'- gCUGCAcggCACGAGCGucgcgcuuGCCGCGaucGCAACCg -3' miRNA: 3'- -GGCGUa--GUGCUUGU--------CGGCGC---CGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 15312 | 0.74 | 0.352798 |
Target: 5'- gCGCAUgGgCGGGCGGCCGuCGaGCAACa -3' miRNA: 3'- gGCGUAgU-GCUUGUCGGC-GC-CGUUGg -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 20793 | 0.74 | 0.336523 |
Target: 5'- gCGCAUCuuccauauCGAGCAGCCGCGaauCGACa -3' miRNA: 3'- gGCGUAGu-------GCUUGUCGGCGCc--GUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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