miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 29051 1.13 0.000856
Target:  5'- uCCGCAUCACGAACAGCCGCGGCAACCc -3'
miRNA:   3'- -GGCGUAGUGCUUGUCGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 22233 0.89 0.037244
Target:  5'- uCgGCGaUGCGGGCAGCCGCGGCGGCCa -3'
miRNA:   3'- -GgCGUaGUGCUUGUCGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 48480 0.87 0.055663
Target:  5'- gCCGCGUgggCACGGGCGGCgCGaCGGCAGCCg -3'
miRNA:   3'- -GGCGUA---GUGCUUGUCG-GC-GCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 17548 0.85 0.067936
Target:  5'- gUCGCG-CGCGAggcgGCAGCCGCGGCGGCg -3'
miRNA:   3'- -GGCGUaGUGCU----UGUCGGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 27857 0.83 0.095255
Target:  5'- gCCGCGUCGCaaGGACGGCgGCaaGGCGGCCg -3'
miRNA:   3'- -GGCGUAGUG--CUUGUCGgCG--CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 17324 0.83 0.100721
Target:  5'- aCCGCAaggagCGCGAGCGcGUCGCGGCGAUCc -3'
miRNA:   3'- -GGCGUa----GUGCUUGU-CGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 35947 0.8 0.159219
Target:  5'- gCGCGUCGCGcgcacaaacaucugGGCGGUCGCGGC-GCCg -3'
miRNA:   3'- gGCGUAGUGC--------------UUGUCGGCGCCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 40396 0.8 0.160509
Target:  5'- gCCGCGUucgCGCGGAuuCAGCCGCgcgucGGCGACCu -3'
miRNA:   3'- -GGCGUA---GUGCUU--GUCGGCG-----CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 56080 0.79 0.169353
Target:  5'- aCGUgAUCGCGGACGGCCGUuucucGGCGAUCg -3'
miRNA:   3'- gGCG-UAGUGCUUGUCGGCG-----CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 10549 0.79 0.169353
Target:  5'- gCCGa--CGCGAcCGGCCGCGcGCAGCCg -3'
miRNA:   3'- -GGCguaGUGCUuGUCGGCGC-CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 33287 0.79 0.173937
Target:  5'- aCCGCAUCGCGcGCAcGCCG-GGC-GCCg -3'
miRNA:   3'- -GGCGUAGUGCuUGU-CGGCgCCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 41183 0.79 0.173937
Target:  5'- gCCGCgAUCGCGuGCGcGCC-CGGCGACCg -3'
miRNA:   3'- -GGCG-UAGUGCuUGU-CGGcGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 20012 0.79 0.178632
Target:  5'- aCUGCGUgGCaAAgAGCCGCGGCGACa -3'
miRNA:   3'- -GGCGUAgUGcUUgUCGGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 62192 0.79 0.178632
Target:  5'- uCCGCGaCGCGGuu-GCCGCGGCGGCg -3'
miRNA:   3'- -GGCGUaGUGCUuguCGGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 62098 0.79 0.178632
Target:  5'- aUGCGUCGCc----GCCGCGGCAACCg -3'
miRNA:   3'- gGCGUAGUGcuuguCGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 11561 0.79 0.182952
Target:  5'- gUGCAUCACGcGCGcugcuauGCCgGCGGCGGCCa -3'
miRNA:   3'- gGCGUAGUGCuUGU-------CGG-CGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 10652 0.78 0.193394
Target:  5'- uCCGCggUACGcuGCGGCUGCGcGCGGCCg -3'
miRNA:   3'- -GGCGuaGUGCu-UGUCGGCGC-CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 40667 0.78 0.193394
Target:  5'- aCCGUcagCGCG-ACGGUCGCGGCAccGCCg -3'
miRNA:   3'- -GGCGua-GUGCuUGUCGGCGCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 4680 0.78 0.214731
Target:  5'- gCCGCggC-CGGAUcgGGCCGCGGCAuCCa -3'
miRNA:   3'- -GGCGuaGuGCUUG--UCGGCGCCGUuGG- -5'
24024 3' -54.9 NC_005262.1 + 3762 0.78 0.214731
Target:  5'- aCCGuCGUCACGGccagcgACGGCCGCGaguaCAACCg -3'
miRNA:   3'- -GGC-GUAGUGCU------UGUCGGCGCc---GUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.