miRNA display CGI


Results 41 - 60 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 20551 0.74 0.344592
Target:  5'- gCCGC-UCuGCgGAACAGCCcacGCGGCGACg -3'
miRNA:   3'- -GGCGuAG-UG-CUUGUCGG---CGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 15312 0.74 0.352798
Target:  5'- gCGCAUgGgCGGGCGGCCGuCGaGCAACa -3'
miRNA:   3'- gGCGUAgU-GCUUGUCGGC-GC-CGUUGg -5'
24024 3' -54.9 NC_005262.1 + 28162 0.74 0.361142
Target:  5'- gCGCGcgGCGcAACuGCgCGCGGCGGCCg -3'
miRNA:   3'- gGCGUagUGC-UUGuCG-GCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 34109 0.74 0.369623
Target:  5'- aCGCGgcgCACGAuGCGGCC-CGGCGucacGCCg -3'
miRNA:   3'- gGCGUa--GUGCU-UGUCGGcGCCGU----UGG- -5'
24024 3' -54.9 NC_005262.1 + 30969 0.74 0.369623
Target:  5'- gCgGCGUCACcaucCGGCCGCcGGCGACUc -3'
miRNA:   3'- -GgCGUAGUGcuu-GUCGGCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 35294 0.73 0.377371
Target:  5'- uCCGCAUCcuuGCGGACguaggcuGGCCacGCGGCggUCg -3'
miRNA:   3'- -GGCGUAG---UGCUUG-------UCGG--CGCCGuuGG- -5'
24024 3' -54.9 NC_005262.1 + 50418 0.73 0.378238
Target:  5'- gCCGCGgagCGCGAG-GGCCGCGuGCAcgucgucguGCCg -3'
miRNA:   3'- -GGCGUa--GUGCUUgUCGGCGC-CGU---------UGG- -5'
24024 3' -54.9 NC_005262.1 + 43918 0.73 0.386988
Target:  5'- gCCGCG-CGCGGcCGGcCCGCGGCcgugucGCCg -3'
miRNA:   3'- -GGCGUaGUGCUuGUC-GGCGCCGu-----UGG- -5'
24024 3' -54.9 NC_005262.1 + 57291 0.73 0.39587
Target:  5'- cCCGCGUgcagcagaACGAGC-GCCGCaucgagcagaucGGCAACCg -3'
miRNA:   3'- -GGCGUAg-------UGCUUGuCGGCG------------CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 15992 0.73 0.403975
Target:  5'- gCGCAUCGCGGcgcacgucGCGcGCaCGCGGCGgaucagcGCCa -3'
miRNA:   3'- gGCGUAGUGCU--------UGU-CG-GCGCCGU-------UGG- -5'
24024 3' -54.9 NC_005262.1 + 59075 0.73 0.404882
Target:  5'- gCGCGacggCGCGGGaggcgugaGGCCGcCGGCGGCCg -3'
miRNA:   3'- gGCGUa---GUGCUUg-------UCGGC-GCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 57304 0.73 0.404882
Target:  5'- gCGCGUCGCGAuGCcGCCGacCGGCAGguCCg -3'
miRNA:   3'- gGCGUAGUGCU-UGuCGGC--GCCGUU--GG- -5'
24024 3' -54.9 NC_005262.1 + 48169 0.73 0.404882
Target:  5'- gCGCGUCGgcgcCGGGCGGCucguCGCGGCAggugcgACCg -3'
miRNA:   3'- gGCGUAGU----GCUUGUCG----GCGCCGU------UGG- -5'
24024 3' -54.9 NC_005262.1 + 41363 0.73 0.404882
Target:  5'- cUCGCGgacggCACGAACGGCa-CGGCuGACCu -3'
miRNA:   3'- -GGCGUa----GUGCUUGUCGgcGCCG-UUGG- -5'
24024 3' -54.9 NC_005262.1 + 58956 0.73 0.404882
Target:  5'- gCGCAgcaguCGAACcagccGGCCGcCGGCGGCCu -3'
miRNA:   3'- gGCGUagu--GCUUG-----UCGGC-GCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 58198 0.73 0.404882
Target:  5'- uCCGCGUCGCcuGCGGagaGCGGCGccGCCc -3'
miRNA:   3'- -GGCGUAGUGcuUGUCgg-CGCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 35404 0.73 0.404882
Target:  5'- aCCGCGcgCACGcucCAGCC-CGGCGACg -3'
miRNA:   3'- -GGCGUa-GUGCuu-GUCGGcGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 5051 0.73 0.404882
Target:  5'- gCGCcugAUCgGCGGGCAGgcCCGCGGCGGCg -3'
miRNA:   3'- gGCG---UAG-UGCUUGUC--GGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 11428 0.73 0.414023
Target:  5'- gCCGCG-CGCGAGCGGCgucuUGCGGaggagGGCCg -3'
miRNA:   3'- -GGCGUaGUGCUUGUCG----GCGCCg----UUGG- -5'
24024 3' -54.9 NC_005262.1 + 17165 0.73 0.414023
Target:  5'- gCCGCGUCgACGGGCGcGCCuauCGGC-GCCg -3'
miRNA:   3'- -GGCGUAG-UGCUUGU-CGGc--GCCGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.