miRNA display CGI


Results 21 - 40 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 10622 0.66 0.804606
Target:  5'- gUCGCGUCG-GcAUAGCCGUuucGGCcGCCc -3'
miRNA:   3'- -GGCGUAGUgCuUGUCGGCG---CCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 15642 0.66 0.804606
Target:  5'- cCUGCucUCGCuucucGCGGCUGCacugugGGCAGCCg -3'
miRNA:   3'- -GGCGu-AGUGcu---UGUCGGCG------CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 10897 0.66 0.804606
Target:  5'- gCGCugGUCGUGAuc-GUCGCGGCAGCUc -3'
miRNA:   3'- gGCG--UAGUGCUuguCGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 17263 0.66 0.804606
Target:  5'- aCGCgGUCGCGucCucGCgCGCGGCcuuGCCg -3'
miRNA:   3'- gGCG-UAGUGCuuGu-CG-GCGCCGu--UGG- -5'
24024 3' -54.9 NC_005262.1 + 47594 0.66 0.804606
Target:  5'- gCGCuUCGCGGAUgaAGUCGuCGGagUAGCCg -3'
miRNA:   3'- gGCGuAGUGCUUG--UCGGC-GCC--GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 50376 0.66 0.804606
Target:  5'- uCCGCgcggccGUCACGGGCucGGCCGgcgcgGGCGcGCCc -3'
miRNA:   3'- -GGCG------UAGUGCUUG--UCGGCg----CCGU-UGG- -5'
24024 3' -54.9 NC_005262.1 + 35155 0.66 0.804606
Target:  5'- aCCGCcgAUC-CGGGCGacGCUGgCGGCAAUg -3'
miRNA:   3'- -GGCG--UAGuGCUUGU--CGGC-GCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 22499 0.66 0.804606
Target:  5'- -gGCG-CGCGAGCGGaucgcgaaGCGGCAGuCCc -3'
miRNA:   3'- ggCGUaGUGCUUGUCgg------CGCCGUU-GG- -5'
24024 3' -54.9 NC_005262.1 + 42569 0.66 0.803668
Target:  5'- gCCGCuucccUCGCucgaaugGAACGcGCCGCcGGaCGACCu -3'
miRNA:   3'- -GGCGu----AGUG-------CUUGU-CGGCG-CC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 24775 0.66 0.801786
Target:  5'- uCCGCgAUCAUGuggcucaucuucaucCGGCCGUaGCGGCCc -3'
miRNA:   3'- -GGCG-UAGUGCuu-------------GUCGGCGcCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 57225 0.66 0.795145
Target:  5'- gCgGCAUCGCGAcGCGcGCCGCcaaucaGGUgaacAACCu -3'
miRNA:   3'- -GgCGUAGUGCU-UGU-CGGCG------CCG----UUGG- -5'
24024 3' -54.9 NC_005262.1 + 43036 0.66 0.795145
Target:  5'- gCGCGUCAUGAGCuGGUcgguuacgaCGCGcGC-GCCg -3'
miRNA:   3'- gGCGUAGUGCUUG-UCG---------GCGC-CGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 47607 0.66 0.795145
Target:  5'- aCCGCAUgaagaACGAucCGGgcuucUCGCGGCuGCCg -3'
miRNA:   3'- -GGCGUAg----UGCUu-GUC-----GGCGCCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 20596 0.66 0.795145
Target:  5'- -gGuCGUCGCGAGC-GCCGCGcCGAUg -3'
miRNA:   3'- ggC-GUAGUGCUUGuCGGCGCcGUUGg -5'
24024 3' -54.9 NC_005262.1 + 12414 0.66 0.795145
Target:  5'- gCCGCcgCGC-----GCUGCGGCAcgaGCCg -3'
miRNA:   3'- -GGCGuaGUGcuuguCGGCGCCGU---UGG- -5'
24024 3' -54.9 NC_005262.1 + 32714 0.66 0.795145
Target:  5'- gCGaCAUCAuCGAGCucggcguGCUGCcGGcCGACCa -3'
miRNA:   3'- gGC-GUAGU-GCUUGu------CGGCG-CC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 41988 0.66 0.795145
Target:  5'- aCCGCcgCgcagaacgcgACGAACGcCCGCcucgaaucgGGCGGCCu -3'
miRNA:   3'- -GGCGuaG----------UGCUUGUcGGCG---------CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 20719 0.66 0.795145
Target:  5'- gCC-CAUCACGGuCGcGUCGCucGGCAGCUc -3'
miRNA:   3'- -GGcGUAGUGCUuGU-CGGCG--CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 17045 0.66 0.795145
Target:  5'- -aGCAgcucCGCGAGCucGUCGCGcGCAcggcGCCg -3'
miRNA:   3'- ggCGUa---GUGCUUGu-CGGCGC-CGU----UGG- -5'
24024 3' -54.9 NC_005262.1 + 1529 0.66 0.795145
Target:  5'- aCGUAUUGCguGAACAGCgccaGCGuugcGCGACCa -3'
miRNA:   3'- gGCGUAGUG--CUUGUCGg---CGC----CGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.