miRNA display CGI


Results 41 - 60 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 12414 0.66 0.795145
Target:  5'- gCCGCcgCGC-----GCUGCGGCAcgaGCCg -3'
miRNA:   3'- -GGCGuaGUGcuuguCGGCGCCGU---UGG- -5'
24024 3' -54.9 NC_005262.1 + 62957 0.66 0.79419
Target:  5'- gCGCGUCGCuucCGGCCgacacGCGGCucuaucaGGCCg -3'
miRNA:   3'- gGCGUAGUGcuuGUCGG-----CGCCG-------UUGG- -5'
24024 3' -54.9 NC_005262.1 + 63392 0.66 0.793233
Target:  5'- gCGCGUguucCACGucgacgccgagccAGCAGCCggccgucaagcagGCGGCGGCUg -3'
miRNA:   3'- gGCGUA----GUGC-------------UUGUCGG-------------CGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 35493 0.66 0.78552
Target:  5'- gUCGCcgggCugGAGCGuGCgCGCGGUAuugagcGCCg -3'
miRNA:   3'- -GGCGua--GugCUUGU-CG-GCGCCGU------UGG- -5'
24024 3' -54.9 NC_005262.1 + 62871 0.66 0.78552
Target:  5'- uCCGCuuucggCGCGAAUcccUCGCuGGCGACCc -3'
miRNA:   3'- -GGCGua----GUGCUUGuc-GGCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 49048 0.66 0.78552
Target:  5'- cCUGCAUCu---GCGGCgucaUGCuGGCGACCa -3'
miRNA:   3'- -GGCGUAGugcuUGUCG----GCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 51927 0.66 0.78552
Target:  5'- gCCGCGcuucagcacuUCGCGAcguCGGCCGCGcugaagucGUcGCCg -3'
miRNA:   3'- -GGCGU----------AGUGCUu--GUCGGCGC--------CGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 48788 0.66 0.78552
Target:  5'- aCGCGUCuuucuGCGG-CGCGGCGuCCg -3'
miRNA:   3'- gGCGUAGugcu-UGUCgGCGCCGUuGG- -5'
24024 3' -54.9 NC_005262.1 + 49706 0.66 0.78552
Target:  5'- aCCGCGacggCGugcCGGGCGGCgaacCGGCGGCCg -3'
miRNA:   3'- -GGCGUa---GU---GCUUGUCGgc--GCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 15898 0.66 0.78552
Target:  5'- gCCGCGUgCGCGcGACGuggcGCCGCGauGC-GCCg -3'
miRNA:   3'- -GGCGUA-GUGC-UUGU----CGGCGC--CGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 29780 0.66 0.78552
Target:  5'- gCGUAgugC-CGGACGG-CGCGGCAcCCc -3'
miRNA:   3'- gGCGUa--GuGCUUGUCgGCGCCGUuGG- -5'
24024 3' -54.9 NC_005262.1 + 51261 0.66 0.78552
Target:  5'- gCCGCGUCGuCGGcugccuGCuGCgCGCucGGCGACUu -3'
miRNA:   3'- -GGCGUAGU-GCU------UGuCG-GCG--CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 51609 0.66 0.78552
Target:  5'- gCCGUGUUGCGcACGgucgucucGCCGuuGCGGCCg -3'
miRNA:   3'- -GGCGUAGUGCuUGU--------CGGCgcCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 6420 0.66 0.78552
Target:  5'- gCCGCGaCuacaagcgGCGGGC-GCCGacgagaGGCGGCCg -3'
miRNA:   3'- -GGCGUaG--------UGCUUGuCGGCg-----CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 50131 0.66 0.78552
Target:  5'- uUCGUcUCGgGAGCAGCCGgCGcCGGCUc -3'
miRNA:   3'- -GGCGuAGUgCUUGUCGGC-GCcGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 43379 0.66 0.78552
Target:  5'- -aGCAUCuucggcgauGCGAGCAuCgGCGGCGAgCu -3'
miRNA:   3'- ggCGUAG---------UGCUUGUcGgCGCCGUUgG- -5'
24024 3' -54.9 NC_005262.1 + 34896 0.66 0.78552
Target:  5'- uCgGCAUCcuCGGACGGCUugaGGCGaaGCCa -3'
miRNA:   3'- -GgCGUAGu-GCUUGUCGGcg-CCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 45216 0.66 0.78552
Target:  5'- gCGCAcguUCugGcgcGCGGUguuCGCGGCAcccGCCg -3'
miRNA:   3'- gGCGU---AGugCu--UGUCG---GCGCCGU---UGG- -5'
24024 3' -54.9 NC_005262.1 + 55406 0.66 0.78552
Target:  5'- gCCGCAU--CGAGCAGCUcgaGCGcCGGCUg -3'
miRNA:   3'- -GGCGUAguGCUUGUCGG---CGCcGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 11152 0.66 0.78552
Target:  5'- uCCgGUcgCACGGGCGGCCcuGCGaCAACg -3'
miRNA:   3'- -GG-CGuaGUGCUUGUCGG--CGCcGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.