miRNA display CGI


Results 61 - 80 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 13482 0.66 0.784549
Target:  5'- gCGCGUCGCGcGCuacucGCUggcgaaggcgaagGCGGCGGCa -3'
miRNA:   3'- gGCGUAGUGCuUGu----CGG-------------CGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 49197 0.66 0.775741
Target:  5'- -gGCAgccuUCGCGAGCAccauGCC-CGGC-GCCa -3'
miRNA:   3'- ggCGU----AGUGCUUGU----CGGcGCCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 49823 0.66 0.775741
Target:  5'- gCCgGCGUCgguGCGGcuuCGGCCGCcGGUucGCCg -3'
miRNA:   3'- -GG-CGUAG---UGCUu--GUCGGCG-CCGu-UGG- -5'
24024 3' -54.9 NC_005262.1 + 36942 0.66 0.775741
Target:  5'- aCUGCAUC-UGAACcGCCGUcgugucgucGGC-ACCa -3'
miRNA:   3'- -GGCGUAGuGCUUGuCGGCG---------CCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 16155 0.66 0.775741
Target:  5'- uUCGuCAUCAgGAucgucggccGCaAGUCGCGGUAGCg -3'
miRNA:   3'- -GGC-GUAGUgCU---------UG-UCGGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 16374 0.66 0.775741
Target:  5'- uUGCAcgcCGCGAGCGGCgCGCaGCAAg- -3'
miRNA:   3'- gGCGUa--GUGCUUGUCG-GCGcCGUUgg -5'
24024 3' -54.9 NC_005262.1 + 34010 0.66 0.775741
Target:  5'- cCCGCcgCGagcuCGAGCAccGCCGCuaccgaucgGGCcGCCg -3'
miRNA:   3'- -GGCGuaGU----GCUUGU--CGGCG---------CCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 23116 0.66 0.775741
Target:  5'- gCUGCGUCgAUGAACuccaCGCGGaAGCCg -3'
miRNA:   3'- -GGCGUAG-UGCUUGucg-GCGCCgUUGG- -5'
24024 3' -54.9 NC_005262.1 + 54481 0.66 0.775741
Target:  5'- gCUGC-UCGCGGuGCAGCCGaagccgcugGGCccGACCg -3'
miRNA:   3'- -GGCGuAGUGCU-UGUCGGCg--------CCG--UUGG- -5'
24024 3' -54.9 NC_005262.1 + 46153 0.67 0.765819
Target:  5'- aUGCGgagCACGucauACAGUC-CGGCGACg -3'
miRNA:   3'- gGCGUa--GUGCu---UGUCGGcGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 39858 0.67 0.765819
Target:  5'- aCGCGUCG-GGAUGGUCGgcUGGCGGCUu -3'
miRNA:   3'- gGCGUAGUgCUUGUCGGC--GCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 50409 0.67 0.765819
Target:  5'- cCUGCGcgGCGGGC-GCUGCGGcCGGCUc -3'
miRNA:   3'- -GGCGUagUGCUUGuCGGCGCC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 28815 0.67 0.765819
Target:  5'- aCgGCGUCcggGCGcGCGGCCucGCGGCGgaACUc -3'
miRNA:   3'- -GgCGUAG---UGCuUGUCGG--CGCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 14162 0.67 0.765819
Target:  5'- uUGCGacaACGAacacACGGCgGCGGCGuuggGCCa -3'
miRNA:   3'- gGCGUag-UGCU----UGUCGgCGCCGU----UGG- -5'
24024 3' -54.9 NC_005262.1 + 44358 0.67 0.765819
Target:  5'- gCUGCGgucagaaaaUCGCGcguCAGCCaGUGGCGcgaGCCa -3'
miRNA:   3'- -GGCGU---------AGUGCuu-GUCGG-CGCCGU---UGG- -5'
24024 3' -54.9 NC_005262.1 + 11846 0.67 0.765819
Target:  5'- uCCGCAUUgaACuGGACGGCCccgcuguCGGCGACn -3'
miRNA:   3'- -GGCGUAG--UG-CUUGUCGGc------GCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 5219 0.67 0.765819
Target:  5'- gCGUAUCcugcACGAuc-GCCGUGGCGucgacGCCg -3'
miRNA:   3'- gGCGUAG----UGCUuguCGGCGCCGU-----UGG- -5'
24024 3' -54.9 NC_005262.1 + 13145 0.67 0.755764
Target:  5'- uCCGCcgCGCGcGCuG-CGCGGCAcaACUc -3'
miRNA:   3'- -GGCGuaGUGCuUGuCgGCGCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 23432 0.67 0.755764
Target:  5'- gCCGCGUCAuCGAGCcGuCCGaCGacuggcgcaugcGCGGCCu -3'
miRNA:   3'- -GGCGUAGU-GCUUGuC-GGC-GC------------CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 42148 0.67 0.755764
Target:  5'- aCGCggCGcCGGGCccGGUCGCGGcCGAUCg -3'
miRNA:   3'- gGCGuaGU-GCUUG--UCGGCGCC-GUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.