miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 69 0.7 0.585564
Target:  5'- gCCGCGgcUCGCGAAgaaguCGGCCGCGccGCAcGCUu -3'
miRNA:   3'- -GGCGU--AGUGCUU-----GUCGGCGC--CGU-UGG- -5'
24024 3' -54.9 NC_005262.1 + 165 0.67 0.714435
Target:  5'- gUGCggCGCGGccgacuucuucGCgAGCCGCGGCcuCCc -3'
miRNA:   3'- gGCGuaGUGCU-----------UG-UCGGCGCCGuuGG- -5'
24024 3' -54.9 NC_005262.1 + 209 0.71 0.511815
Target:  5'- uCCGCAgcgcgcgCACGAGCAuGCCGUacGGCGucaGCg -3'
miRNA:   3'- -GGCGUa------GUGCUUGU-CGGCG--CCGU---UGg -5'
24024 3' -54.9 NC_005262.1 + 690 0.68 0.671852
Target:  5'- aCCGCuAUCACGAACuGCaUGCGcGUuAUCa -3'
miRNA:   3'- -GGCG-UAGUGCUUGuCG-GCGC-CGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 960 0.69 0.61788
Target:  5'- uUGCGUCAUccguCAGCCccugccgaGUGGCGACCu -3'
miRNA:   3'- gGCGUAGUGcuu-GUCGG--------CGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 1249 0.68 0.66109
Target:  5'- uCCGCG-CAgGAugGCaAGCCcgcGCGGCAGCa -3'
miRNA:   3'- -GGCGUaGUgCU--UG-UCGG---CGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 1418 0.66 0.813892
Target:  5'- uCCGC--CACGAccGCGGCCGCuucgucgaGcGCAGCg -3'
miRNA:   3'- -GGCGuaGUGCU--UGUCGGCG--------C-CGUUGg -5'
24024 3' -54.9 NC_005262.1 + 1499 0.71 0.491418
Target:  5'- gCUGCAUCuGCGGAgggaGGCUGCGGCGGa- -3'
miRNA:   3'- -GGCGUAG-UGCUUg---UCGGCGCCGUUgg -5'
24024 3' -54.9 NC_005262.1 + 1515 0.7 0.553584
Target:  5'- gCUGCGcUCgACGaAGCGGCCGCGGUcguGGCg -3'
miRNA:   3'- -GGCGU-AG-UGC-UUGUCGGCGCCG---UUGg -5'
24024 3' -54.9 NC_005262.1 + 1529 0.66 0.795145
Target:  5'- aCGUAUUGCguGAACAGCgccaGCGuugcGCGACCa -3'
miRNA:   3'- gGCGUAGUG--CUUGUCGg---CGC----CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 1920 0.72 0.471406
Target:  5'- aCCGCAU-GC--GCAGCCuGCGGCGAgCa -3'
miRNA:   3'- -GGCGUAgUGcuUGUCGG-CGCCGUUgG- -5'
24024 3' -54.9 NC_005262.1 + 2260 0.67 0.724912
Target:  5'- gCCGCGUCGauGACGGCC-CGcGCAAg- -3'
miRNA:   3'- -GGCGUAGUgcUUGUCGGcGC-CGUUgg -5'
24024 3' -54.9 NC_005262.1 + 2475 0.72 0.442189
Target:  5'- -aGCAUgCGCGuGguGCCGCgcuuGGCGACCa -3'
miRNA:   3'- ggCGUA-GUGCuUguCGGCG----CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 2529 0.66 0.813892
Target:  5'- aCCGUAagACcGGCgAGUgGCaGGCAGCCg -3'
miRNA:   3'- -GGCGUagUGcUUG-UCGgCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 2759 0.68 0.70388
Target:  5'- gCGCuUCA-GcACGGCgGCGGguGCCg -3'
miRNA:   3'- gGCGuAGUgCuUGUCGgCGCCguUGG- -5'
24024 3' -54.9 NC_005262.1 + 3084 0.66 0.813892
Target:  5'- gCGcCGUCAuCGGuuuGCCGCaGUAGCCg -3'
miRNA:   3'- gGC-GUAGU-GCUuguCGGCGcCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 3343 0.68 0.70388
Target:  5'- gUCGCugAUgACGA--GGCCGCGGCucgcuagauGCCg -3'
miRNA:   3'- -GGCG--UAgUGCUugUCGGCGCCGu--------UGG- -5'
24024 3' -54.9 NC_005262.1 + 3426 0.68 0.671852
Target:  5'- gCCGCAUCGCuu-CAGCgCGCucGGgGAUCa -3'
miRNA:   3'- -GGCGUAGUGcuuGUCG-GCG--CCgUUGG- -5'
24024 3' -54.9 NC_005262.1 + 3762 0.78 0.214731
Target:  5'- aCCGuCGUCACGGccagcgACGGCCGCGaguaCAACCg -3'
miRNA:   3'- -GGC-GUAGUGCU------UGUCGGCGCc---GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 4119 0.69 0.650302
Target:  5'- uCCGCG-CGCGAA-AGCCG-GGCAuaaaaaaacggcGCCg -3'
miRNA:   3'- -GGCGUaGUGCUUgUCGGCgCCGU------------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.