miRNA display CGI


Results 21 - 40 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 4431 0.68 0.693258
Target:  5'- aCG-AUCGCG-ACGGCCGaUGGaCGGCCc -3'
miRNA:   3'- gGCgUAGUGCuUGUCGGC-GCC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 4565 0.69 0.61788
Target:  5'- gCGCAucUCGCGc-CAGCgGCGGCGcuGCUc -3'
miRNA:   3'- gGCGU--AGUGCuuGUCGgCGCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 4647 0.67 0.7353
Target:  5'- gCCGCuggCGCGAGaugcGCCGCGcGCGcacgaugaaGCCc -3'
miRNA:   3'- -GGCGua-GUGCUUgu--CGGCGC-CGU---------UGG- -5'
24024 3' -54.9 NC_005262.1 + 4680 0.78 0.214731
Target:  5'- gCCGCggC-CGGAUcgGGCCGCGGCAuCCa -3'
miRNA:   3'- -GGCGuaGuGCUUG--UCGGCGCCGUuGG- -5'
24024 3' -54.9 NC_005262.1 + 4766 0.76 0.276973
Target:  5'- gCCGCggCcCGAucCGGCCGCGGCAugGCUg -3'
miRNA:   3'- -GGCGuaGuGCUu-GUCGGCGCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 5051 0.73 0.404882
Target:  5'- gCGCcugAUCgGCGGGCAGgcCCGCGGCGGCg -3'
miRNA:   3'- gGCG---UAG-UGCUUGUC--GGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 5129 0.73 0.423289
Target:  5'- cCCGCcgAUCaggcgccggccgGCGAGCAacuGCCGCuggaGGCAGCCg -3'
miRNA:   3'- -GGCG--UAG------------UGCUUGU---CGGCG----CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 5179 0.77 0.244209
Target:  5'- gCCgGCGUCGCGGgcGCGGgCGCGGCcggcgcGACCg -3'
miRNA:   3'- -GG-CGUAGUGCU--UGUCgGCGCCG------UUGG- -5'
24024 3' -54.9 NC_005262.1 + 5219 0.67 0.765819
Target:  5'- gCGUAUCcugcACGAuc-GCCGUGGCGucgacGCCg -3'
miRNA:   3'- gGCGUAG----UGCUuguCGGCGCCGU-----UGG- -5'
24024 3' -54.9 NC_005262.1 + 5488 0.7 0.553584
Target:  5'- -aGCuUCACGAucauguaGGCCGCGaCGACCg -3'
miRNA:   3'- ggCGuAGUGCUug-----UCGGCGCcGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 5709 0.69 0.61788
Target:  5'- gCGCAacucgggcgaggUCGCGAACAucgacgccGCCGCGGUGuACUc -3'
miRNA:   3'- gGCGU------------AGUGCUUGU--------CGGCGCCGU-UGG- -5'
24024 3' -54.9 NC_005262.1 + 6060 0.71 0.501571
Target:  5'- aCCGCAcCACGGGguugcgucaGGCCGCGGCcuUCu -3'
miRNA:   3'- -GGCGUaGUGCUUg--------UCGGCGCCGuuGG- -5'
24024 3' -54.9 NC_005262.1 + 6182 0.7 0.56313
Target:  5'- uCCGCAacgUGCGGAUcaccgagaagaaGGCCGCGGCcugacgcAACCc -3'
miRNA:   3'- -GGCGUa--GUGCUUG------------UCGGCGCCG-------UUGG- -5'
24024 3' -54.9 NC_005262.1 + 6420 0.66 0.78552
Target:  5'- gCCGCGaCuacaagcgGCGGGC-GCCGacgagaGGCGGCCg -3'
miRNA:   3'- -GGCGUaG--------UGCUUGuCGGCg-----CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 6888 0.67 0.724912
Target:  5'- gCCGCgAUCGCGuuuuCgAGCCGCGuGCc-CCa -3'
miRNA:   3'- -GGCG-UAGUGCuu--G-UCGGCGC-CGuuGG- -5'
24024 3' -54.9 NC_005262.1 + 7002 0.72 0.471406
Target:  5'- aCGCuu--CGAACAG-CGCGGCGGCUu -3'
miRNA:   3'- gGCGuaguGCUUGUCgGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 7262 0.68 0.671852
Target:  5'- gCCGCAaUUAC--GCGGuaGCGGCAugCg -3'
miRNA:   3'- -GGCGU-AGUGcuUGUCggCGCCGUugG- -5'
24024 3' -54.9 NC_005262.1 + 7467 0.67 0.745587
Target:  5'- uCUGCAagaUCAaGGACGGCCcgaccgucGUGGCGACg -3'
miRNA:   3'- -GGCGU---AGUgCUUGUCGG--------CGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 7515 0.68 0.66109
Target:  5'- aCGCAUCcauCGGGCAGgUuCGGCGGCg -3'
miRNA:   3'- gGCGUAGu--GCUUGUCgGcGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 7583 0.71 0.481362
Target:  5'- aUGCGUCGCGAuccaguuCAGgaCCGCGGaUAGCCc -3'
miRNA:   3'- gGCGUAGUGCUu------GUC--GGCGCC-GUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.