miRNA display CGI


Results 41 - 60 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 7742 0.72 0.451815
Target:  5'- gCCGC-UCGCGGagAUAGCCGUcGCcGCCg -3'
miRNA:   3'- -GGCGuAGUGCU--UGUCGGCGcCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 7787 0.72 0.471406
Target:  5'- cCCGCG-CAUGGAgAGCuUGCGGCucuCCa -3'
miRNA:   3'- -GGCGUaGUGCUUgUCG-GCGCCGuu-GG- -5'
24024 3' -54.9 NC_005262.1 + 8371 0.72 0.442189
Target:  5'- gCCGCcUCGCGAGCga-CGCGgGCAGCUu -3'
miRNA:   3'- -GGCGuAGUGCUUGucgGCGC-CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 9228 0.73 0.414023
Target:  5'- uCCGCAUUcCGAcCGGCC-CGGC-GCCg -3'
miRNA:   3'- -GGCGUAGuGCUuGUCGGcGCCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 10439 0.69 0.603849
Target:  5'- aCCGCAUgCAgaugcucggcaagcCGGGCggaAGCCGCgacgacagcGGCGACCa -3'
miRNA:   3'- -GGCGUA-GU--------------GCUUG---UCGGCG---------CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 10502 0.69 0.607085
Target:  5'- gCCaGCAUgGCGGccaGCAGCagCGCgggGGCGGCCg -3'
miRNA:   3'- -GG-CGUAgUGCU---UGUCG--GCG---CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 10549 0.79 0.169353
Target:  5'- gCCGa--CGCGAcCGGCCGCGcGCAGCCg -3'
miRNA:   3'- -GGCguaGUGCUuGUCGGCGC-CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 10622 0.66 0.804606
Target:  5'- gUCGCGUCG-GcAUAGCCGUuucGGCcGCCc -3'
miRNA:   3'- -GGCGUAGUgCuUGUCGGCG---CCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 10652 0.78 0.193394
Target:  5'- uCCGCggUACGcuGCGGCUGCGcGCGGCCg -3'
miRNA:   3'- -GGCGuaGUGCu-UGUCGGCGC-CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 10693 0.68 0.682578
Target:  5'- cCUGCAUgCGCaGAucgaGGCCGCGcGCAcgcgGCCg -3'
miRNA:   3'- -GGCGUA-GUG-CUug--UCGGCGC-CGU----UGG- -5'
24024 3' -54.9 NC_005262.1 + 10735 0.67 0.714435
Target:  5'- cCCGCAaaaucUCACcgaauguuuGAACGGuuGUGGUGAUCc -3'
miRNA:   3'- -GGCGU-----AGUG---------CUUGUCggCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 10797 0.71 0.491418
Target:  5'- aCUGCugCGCGAGCuGCCGCGaCGAUCa -3'
miRNA:   3'- -GGCGuaGUGCUUGuCGGCGCcGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 10897 0.66 0.804606
Target:  5'- gCGCugGUCGUGAuc-GUCGCGGCAGCUc -3'
miRNA:   3'- gGCG--UAGUGCUuguCGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 11058 0.69 0.628687
Target:  5'- gCCGCAgcgUCGCcugagcccGAGCGGCCaaagGGCGGCCc -3'
miRNA:   3'- -GGCGU---AGUG--------CUUGUCGGcg--CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 11092 0.71 0.511815
Target:  5'- gCCGCcUCGCucguCAGCCGUGcgagcGCGACCg -3'
miRNA:   3'- -GGCGuAGUGcuu-GUCGGCGC-----CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 11152 0.66 0.78552
Target:  5'- uCCgGUcgCACGGGCGGCCcuGCGaCAACg -3'
miRNA:   3'- -GG-CGuaGUGCUUGUCGG--CGCcGUUGg -5'
24024 3' -54.9 NC_005262.1 + 11428 0.73 0.414023
Target:  5'- gCCGCG-CGCGAGCGGCgucuUGCGGaggagGGCCg -3'
miRNA:   3'- -GGCGUaGUGCUUGUCG----GCGCCg----UUGG- -5'
24024 3' -54.9 NC_005262.1 + 11471 0.67 0.724912
Target:  5'- aCCGCGcucgcgCGCGAGCacaugGGCCGCGuc-GCCg -3'
miRNA:   3'- -GGCGUa-----GUGCUUG-----UCGGCGCcguUGG- -5'
24024 3' -54.9 NC_005262.1 + 11540 0.71 0.481362
Target:  5'- gCGCGguaggCACGAugcGCGGgCGCGGCGugUc -3'
miRNA:   3'- gGCGUa----GUGCU---UGUCgGCGCCGUugG- -5'
24024 3' -54.9 NC_005262.1 + 11561 0.79 0.182952
Target:  5'- gUGCAUCACGcGCGcugcuauGCCgGCGGCGGCCa -3'
miRNA:   3'- gGCGUAGUGCuUGU-------CGG-CGCCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.