miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 63872 0.72 0.442189
Target:  5'- cCCGacUCGCGAG-AGCCGgGGCAAUCc -3'
miRNA:   3'- -GGCguAGUGCUUgUCGGCgCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 63392 0.66 0.793233
Target:  5'- gCGCGUguucCACGucgacgccgagccAGCAGCCggccgucaagcagGCGGCGGCUg -3'
miRNA:   3'- gGCGUA----GUGC-------------UUGUCGG-------------CGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 63068 0.75 0.31315
Target:  5'- aCGuCAUCGCGGGCGaguauGCgGCGGCGugCa -3'
miRNA:   3'- gGC-GUAGUGCUUGU-----CGgCGCCGUugG- -5'
24024 3' -54.9 NC_005262.1 + 62957 0.66 0.79419
Target:  5'- gCGCGUCGCuucCGGCCgacacGCGGCucuaucaGGCCg -3'
miRNA:   3'- gGCGUAGUGcuuGUCGG-----CGCCG-------UUGG- -5'
24024 3' -54.9 NC_005262.1 + 62920 0.68 0.693258
Target:  5'- aCCGCGUCG-----AGCCGUGGcCGAUCg -3'
miRNA:   3'- -GGCGUAGUgcuugUCGGCGCC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 62871 0.66 0.78552
Target:  5'- uCCGCuuucggCGCGAAUcccUCGCuGGCGACCc -3'
miRNA:   3'- -GGCGua----GUGCUUGuc-GGCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 62192 0.79 0.178632
Target:  5'- uCCGCGaCGCGGuu-GCCGCGGCGGCg -3'
miRNA:   3'- -GGCGUaGUGCUuguCGGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 62123 0.72 0.451815
Target:  5'- gCCGCAUCGaggaggaGGAUcGCgCGCGGCGAUg -3'
miRNA:   3'- -GGCGUAGUg------CUUGuCG-GCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 62098 0.79 0.178632
Target:  5'- aUGCGUCGCc----GCCGCGGCAACCg -3'
miRNA:   3'- gGCGUAGUGcuuguCGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 61482 0.67 0.724912
Target:  5'- cUCGCG-CGCGAggucguaguaGCGGCUGCGcaGCGGCUu -3'
miRNA:   3'- -GGCGUaGUGCU----------UGUCGGCGC--CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 61442 0.67 0.724912
Target:  5'- uCCaCGUCGCGAAgaaGGCgGCGGaCGGCg -3'
miRNA:   3'- -GGcGUAGUGCUUg--UCGgCGCC-GUUGg -5'
24024 3' -54.9 NC_005262.1 + 61408 0.69 0.628687
Target:  5'- cUCGCG-CGCGA--GGCgaagGCGGCGGCCg -3'
miRNA:   3'- -GGCGUaGUGCUugUCGg---CGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 61361 0.68 0.670778
Target:  5'- gCCGCgccgaucgagucuGUCACGAACuGGCC-CaGGCcGCCg -3'
miRNA:   3'- -GGCG-------------UAGUGCUUG-UCGGcG-CCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 61142 0.71 0.532553
Target:  5'- aCGCGcUgGCGcAGCAGaUCGCGGCGGCg -3'
miRNA:   3'- gGCGU-AgUGC-UUGUC-GGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 60876 0.67 0.745587
Target:  5'- gCGCGaaagCGCGAugaaguCGGCCGUGcGC-ACCg -3'
miRNA:   3'- gGCGUa---GUGCUu-----GUCGGCGC-CGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 60631 0.66 0.813892
Target:  5'- gCGCAcgcUgGCGAGCGGCgagcacCGCgGGCAAgCa -3'
miRNA:   3'- gGCGU---AgUGCUUGUCG------GCG-CCGUUgG- -5'
24024 3' -54.9 NC_005262.1 + 60314 0.68 0.693258
Target:  5'- aCGCAgaugUACGAggacgccuACGGCgcgCGCGGCuACCu -3'
miRNA:   3'- gGCGUa---GUGCU--------UGUCG---GCGCCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 60167 0.73 0.423289
Target:  5'- gCCGCcgUgaagGCGcuCGGCCaguggGCGGCAACCg -3'
miRNA:   3'- -GGCGuaG----UGCuuGUCGG-----CGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 59948 0.66 0.795145
Target:  5'- gCgGCuUCACGAACu-CCGCGacGCGAUCg -3'
miRNA:   3'- -GgCGuAGUGCUUGucGGCGC--CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 59860 0.7 0.553584
Target:  5'- aUCGCGUCGCGgaguucGugAGCCGCuGCAAg- -3'
miRNA:   3'- -GGCGUAGUGC------UugUCGGCGcCGUUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.