miRNA display CGI


Results 21 - 40 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 59797 0.68 0.671852
Target:  5'- aCGCGUUccuCGAGggcacCGGcCCGCaGGCGGCCa -3'
miRNA:   3'- gGCGUAGu--GCUU-----GUC-GGCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 59410 0.68 0.657856
Target:  5'- uUCGCAUCAgccgucgucaugccCGAGCcGCCGUccGGCAuguCCu -3'
miRNA:   3'- -GGCGUAGU--------------GCUUGuCGGCG--CCGUu--GG- -5'
24024 3' -54.9 NC_005262.1 + 59388 0.66 0.813892
Target:  5'- gCGC-UCGCGcAGCAGgCGC-GCGACa -3'
miRNA:   3'- gGCGuAGUGC-UUGUCgGCGcCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 59282 0.72 0.471406
Target:  5'- gCGCGUCGCGcggaucaacgagGACAuGCCGgaCGGCGGCUc -3'
miRNA:   3'- gGCGUAGUGC------------UUGU-CGGC--GCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 59239 0.7 0.553584
Target:  5'- uUCGCGUCcuccauGCGcGCGGCgaCGCGGCccGGCCg -3'
miRNA:   3'- -GGCGUAG------UGCuUGUCG--GCGCCG--UUGG- -5'
24024 3' -54.9 NC_005262.1 + 59075 0.73 0.404882
Target:  5'- gCGCGacggCGCGGGaggcgugaGGCCGcCGGCGGCCg -3'
miRNA:   3'- gGCGUa---GUGCUUg-------UCGGC-GCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 58998 0.67 0.723868
Target:  5'- cCCGCgccGUCGCGcuucGACcgucugcaAGCCGCGGUgcaggacaacaugAACCg -3'
miRNA:   3'- -GGCG---UAGUGC----UUG--------UCGGCGCCG-------------UUGG- -5'
24024 3' -54.9 NC_005262.1 + 58988 0.68 0.702821
Target:  5'- gCCGCcggccugAUCGC--GCAG-CGCGGCAGCa -3'
miRNA:   3'- -GGCG-------UAGUGcuUGUCgGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 58956 0.73 0.404882
Target:  5'- gCGCAgcaguCGAACcagccGGCCGcCGGCGGCCu -3'
miRNA:   3'- gGCGUagu--GCUUG-----UCGGC-GCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 58920 0.69 0.628687
Target:  5'- uCUGCGUgC-CGAAgcGCCGCaGCAGCCa -3'
miRNA:   3'- -GGCGUA-GuGCUUguCGGCGcCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 58899 0.75 0.31315
Target:  5'- gCCGCGcugCGCGAucaGGCCgGCGGCccGACCg -3'
miRNA:   3'- -GGCGUa--GUGCUug-UCGG-CGCCG--UUGG- -5'
24024 3' -54.9 NC_005262.1 + 58685 0.77 0.232033
Target:  5'- cCCGCGUUGCGAGCgcgcaacaAGCUgGCGGCAugCc -3'
miRNA:   3'- -GGCGUAGUGCUUG--------UCGG-CGCCGUugG- -5'
24024 3' -54.9 NC_005262.1 + 58611 0.66 0.813892
Target:  5'- gUGCAgcagCACGGGCAGg-GCGGuCGACUg -3'
miRNA:   3'- gGCGUa---GUGCUUGUCggCGCC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 58533 0.67 0.745587
Target:  5'- gCCGCG-CACGccu-GCCGgGGCGuCCu -3'
miRNA:   3'- -GGCGUaGUGCuuguCGGCgCCGUuGG- -5'
24024 3' -54.9 NC_005262.1 + 58466 0.7 0.544087
Target:  5'- gCgGCGUCACGAcgucggACGGCacgauccaucugguaGCGGCgAACCu -3'
miRNA:   3'- -GgCGUAGUGCU------UGUCGg--------------CGCCG-UUGG- -5'
24024 3' -54.9 NC_005262.1 + 58198 0.73 0.404882
Target:  5'- uCCGCGUCGCcuGCGGagaGCGGCGccGCCc -3'
miRNA:   3'- -GGCGUAGUGcuUGUCgg-CGCCGU--UGG- -5'
24024 3' -54.9 NC_005262.1 + 57528 0.67 0.7353
Target:  5'- gCCGCGgcaucCGCGGACGguGCCGgagcguuguCGGCcGCCu -3'
miRNA:   3'- -GGCGUa----GUGCUUGU--CGGC---------GCCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 57445 0.75 0.328593
Target:  5'- aCCGUc-CGCGGAU-GCCGCGGCGGCg -3'
miRNA:   3'- -GGCGuaGUGCUUGuCGGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 57304 0.73 0.404882
Target:  5'- gCGCGUCGCGAuGCcGCCGacCGGCAGguCCg -3'
miRNA:   3'- gGCGUAGUGCU-UGuCGGC--GCCGUU--GG- -5'
24024 3' -54.9 NC_005262.1 + 57291 0.73 0.39587
Target:  5'- cCCGCGUgcagcagaACGAGC-GCCGCaucgagcagaucGGCAACCg -3'
miRNA:   3'- -GGCGUAg-------UGCUUGuCGGCG------------CCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.