miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 43815 0.75 0.298264
Target:  5'- -gGCgAUCGCGGcgacACGGCCGCGGgcCGGCCg -3'
miRNA:   3'- ggCG-UAGUGCU----UGUCGGCGCC--GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 4680 0.78 0.214731
Target:  5'- gCCGCggC-CGGAUcgGGCCGCGGCAuCCa -3'
miRNA:   3'- -GGCGuaGuGCUUG--UCGGCGCCGUuGG- -5'
24024 3' -54.9 NC_005262.1 + 52471 0.77 0.231438
Target:  5'- cCCGCAgUACGAggaGCAGCCGCugaagcggacgcaGGCGAUCa -3'
miRNA:   3'- -GGCGUaGUGCU---UGUCGGCG-------------CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 58685 0.77 0.232033
Target:  5'- cCCGCGUUGCGAGCgcgcaacaAGCUgGCGGCAugCc -3'
miRNA:   3'- -GGCGUAGUGCUUG--------UCGG-CGCCGUugG- -5'
24024 3' -54.9 NC_005262.1 + 5179 0.77 0.244209
Target:  5'- gCCgGCGUCGCGGgcGCGGgCGCGGCcggcgcGACCg -3'
miRNA:   3'- -GG-CGUAGUGCU--UGUCgGCGCCG------UUGG- -5'
24024 3' -54.9 NC_005262.1 + 47735 0.76 0.256912
Target:  5'- cCUGUAUCugGugcgccgcCGGCCGCGGCgAACCc -3'
miRNA:   3'- -GGCGUAGugCuu------GUCGGCGCCG-UUGG- -5'
24024 3' -54.9 NC_005262.1 + 25533 0.76 0.262802
Target:  5'- uCCGCGUCGCGAcguccguGC-GCgGCGGCAcgauccACCg -3'
miRNA:   3'- -GGCGUAGUGCU-------UGuCGgCGCCGU------UGG- -5'
24024 3' -54.9 NC_005262.1 + 20576 0.76 0.27015
Target:  5'- -aGCAgcccgGCGAGCAGCgCGCGGCGcGCCg -3'
miRNA:   3'- ggCGUag---UGCUUGUCG-GCGCCGU-UGG- -5'
24024 3' -54.9 NC_005262.1 + 45390 0.76 0.283932
Target:  5'- -aGCAUCugGGcggcGCAGCaGCaGGCAGCCg -3'
miRNA:   3'- ggCGUAGugCU----UGUCGgCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 11561 0.79 0.182952
Target:  5'- gUGCAUCACGcGCGcugcuauGCCgGCGGCGGCCa -3'
miRNA:   3'- gGCGUAGUGCuUGU-------CGG-CGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 62098 0.79 0.178632
Target:  5'- aUGCGUCGCc----GCCGCGGCAACCg -3'
miRNA:   3'- gGCGUAGUGcuuguCGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 33287 0.79 0.173937
Target:  5'- aCCGCAUCGCGcGCAcGCCG-GGC-GCCg -3'
miRNA:   3'- -GGCGUAGUGCuUGU-CGGCgCCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 48480 0.87 0.055663
Target:  5'- gCCGCGUgggCACGGGCGGCgCGaCGGCAGCCg -3'
miRNA:   3'- -GGCGUA---GUGCUUGUCG-GC-GCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 17548 0.85 0.067936
Target:  5'- gUCGCG-CGCGAggcgGCAGCCGCGGCGGCg -3'
miRNA:   3'- -GGCGUaGUGCU----UGUCGGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 27857 0.83 0.095255
Target:  5'- gCCGCGUCGCaaGGACGGCgGCaaGGCGGCCg -3'
miRNA:   3'- -GGCGUAGUG--CUUGUCGgCG--CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 17324 0.83 0.100721
Target:  5'- aCCGCAaggagCGCGAGCGcGUCGCGGCGAUCc -3'
miRNA:   3'- -GGCGUa----GUGCUUGU-CGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 40396 0.8 0.160509
Target:  5'- gCCGCGUucgCGCGGAuuCAGCCGCgcgucGGCGACCu -3'
miRNA:   3'- -GGCGUA---GUGCUU--GUCGGCG-----CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 10549 0.79 0.169353
Target:  5'- gCCGa--CGCGAcCGGCCGCGcGCAGCCg -3'
miRNA:   3'- -GGCguaGUGCUuGUCGGCGC-CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 56080 0.79 0.169353
Target:  5'- aCGUgAUCGCGGACGGCCGUuucucGGCGAUCg -3'
miRNA:   3'- gGCG-UAGUGCUUGUCGGCG-----CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 41183 0.79 0.173937
Target:  5'- gCCGCgAUCGCGuGCGcGCC-CGGCGACCg -3'
miRNA:   3'- -GGCG-UAGUGCuUGU-CGGcGCCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.