miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 3' -54.9 NC_005262.1 + 2529 0.66 0.813892
Target:  5'- aCCGUAagACcGGCgAGUgGCaGGCAGCCg -3'
miRNA:   3'- -GGCGUagUGcUUG-UCGgCG-CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 12414 0.66 0.795145
Target:  5'- gCCGCcgCGC-----GCUGCGGCAcgaGCCg -3'
miRNA:   3'- -GGCGuaGUGcuuguCGGCGCCGU---UGG- -5'
24024 3' -54.9 NC_005262.1 + 63392 0.66 0.793233
Target:  5'- gCGCGUguucCACGucgacgccgagccAGCAGCCggccgucaagcagGCGGCGGCUg -3'
miRNA:   3'- gGCGUA----GUGC-------------UUGUCGG-------------CGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 22233 0.89 0.037244
Target:  5'- uCgGCGaUGCGGGCAGCCGCGGCGGCCa -3'
miRNA:   3'- -GgCGUaGUGCUUGUCGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 49866 0.66 0.813892
Target:  5'- -gGCGUC-CGGcGCGGCaGCGGCcggAGCCu -3'
miRNA:   3'- ggCGUAGuGCU-UGUCGgCGCCG---UUGG- -5'
24024 3' -54.9 NC_005262.1 + 54650 0.66 0.813892
Target:  5'- gCGCcUCGCucGCGaaCGCGGCGACg -3'
miRNA:   3'- gGCGuAGUGcuUGUcgGCGCCGUUGg -5'
24024 3' -54.9 NC_005262.1 + 23526 0.66 0.812972
Target:  5'- gCGCcaGUCGuCGGACGGCucgaugaCGCGGCucauGCUg -3'
miRNA:   3'- gGCG--UAGU-GCUUGUCG-------GCGCCGu---UGG- -5'
24024 3' -54.9 NC_005262.1 + 10897 0.66 0.804606
Target:  5'- gCGCugGUCGUGAuc-GUCGCGGCAGCUc -3'
miRNA:   3'- gGCG--UAGUGCUuguCGGCGCCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 17263 0.66 0.804606
Target:  5'- aCGCgGUCGCGucCucGCgCGCGGCcuuGCCg -3'
miRNA:   3'- gGCG-UAGUGCuuGu-CG-GCGCCGu--UGG- -5'
24024 3' -54.9 NC_005262.1 + 43036 0.66 0.795145
Target:  5'- gCGCGUCAUGAGCuGGUcgguuacgaCGCGcGC-GCCg -3'
miRNA:   3'- gGCGUAGUGCUUG-UCG---------GCGC-CGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 50376 0.66 0.804606
Target:  5'- uCCGCgcggccGUCACGGGCucGGCCGgcgcgGGCGcGCCc -3'
miRNA:   3'- -GGCG------UAGUGCUUG--UCGGCg----CCGU-UGG- -5'
24024 3' -54.9 NC_005262.1 + 15642 0.66 0.804606
Target:  5'- cCUGCucUCGCuucucGCGGCUGCacugugGGCAGCCg -3'
miRNA:   3'- -GGCGu-AGUGcu---UGUCGGCG------CCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 48912 0.66 0.813892
Target:  5'- aUCGCcUCaACGAACGGCuUGCcGaCGACCg -3'
miRNA:   3'- -GGCGuAG-UGCUUGUCG-GCGcC-GUUGG- -5'
24024 3' -54.9 NC_005262.1 + 24775 0.66 0.801786
Target:  5'- uCCGCgAUCAUGuggcucaucuucaucCGGCCGUaGCGGCCc -3'
miRNA:   3'- -GGCG-UAGUGCuu-------------GUCGGCGcCGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 28681 0.66 0.813892
Target:  5'- gCGCAUgaaGCGGAuCAcGCCGUagGGCAuGCCg -3'
miRNA:   3'- gGCGUAg--UGCUU-GU-CGGCG--CCGU-UGG- -5'
24024 3' -54.9 NC_005262.1 + 10622 0.66 0.804606
Target:  5'- gUCGCGUCG-GcAUAGCCGUuucGGCcGCCc -3'
miRNA:   3'- -GGCGUAGUgCuUGUCGGCG---CCGuUGG- -5'
24024 3' -54.9 NC_005262.1 + 20596 0.66 0.795145
Target:  5'- -gGuCGUCGCGAGC-GCCGCGcCGAUg -3'
miRNA:   3'- ggC-GUAGUGCUUGuCGGCGCcGUUGg -5'
24024 3' -54.9 NC_005262.1 + 59948 0.66 0.795145
Target:  5'- gCgGCuUCACGAACu-CCGCGacGCGAUCg -3'
miRNA:   3'- -GgCGuAGUGCUUGucGGCGC--CGUUGG- -5'
24024 3' -54.9 NC_005262.1 + 42055 0.66 0.813892
Target:  5'- gCgGUGUCAgGcAACAGgCGCGGCAc-- -3'
miRNA:   3'- -GgCGUAGUgC-UUGUCgGCGCCGUugg -5'
24024 3' -54.9 NC_005262.1 + 58611 0.66 0.813892
Target:  5'- gUGCAgcagCACGGGCAGg-GCGGuCGACUg -3'
miRNA:   3'- gGCGUa---GUGCUUGUCggCGCC-GUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.