Results 21 - 40 of 364 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24024 | 3' | -54.9 | NC_005262.1 | + | 62871 | 0.66 | 0.78552 |
Target: 5'- uCCGCuuucggCGCGAAUcccUCGCuGGCGACCc -3' miRNA: 3'- -GGCGua----GUGCUUGuc-GGCG-CCGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 63392 | 0.66 | 0.793233 |
Target: 5'- gCGCGUguucCACGucgacgccgagccAGCAGCCggccgucaagcagGCGGCGGCUg -3' miRNA: 3'- gGCGUA----GUGC-------------UUGUCGG-------------CGCCGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 15642 | 0.66 | 0.804606 |
Target: 5'- cCUGCucUCGCuucucGCGGCUGCacugugGGCAGCCg -3' miRNA: 3'- -GGCGu-AGUGcu---UGUCGGCG------CCGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 42055 | 0.66 | 0.813892 |
Target: 5'- gCgGUGUCAgGcAACAGgCGCGGCAc-- -3' miRNA: 3'- -GgCGUAGUgC-UUGUCgGCGCCGUugg -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 36942 | 0.66 | 0.775741 |
Target: 5'- aCUGCAUC-UGAACcGCCGUcgugucgucGGC-ACCa -3' miRNA: 3'- -GGCGUAGuGCUUGuCGGCG---------CCGuUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 51609 | 0.66 | 0.78552 |
Target: 5'- gCCGUGUUGCGcACGgucgucucGCCGuuGCGGCCg -3' miRNA: 3'- -GGCGUAGUGCuUGU--------CGGCgcCGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 12414 | 0.66 | 0.795145 |
Target: 5'- gCCGCcgCGC-----GCUGCGGCAcgaGCCg -3' miRNA: 3'- -GGCGuaGUGcuuguCGGCGCCGU---UGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 28681 | 0.66 | 0.813892 |
Target: 5'- gCGCAUgaaGCGGAuCAcGCCGUagGGCAuGCCg -3' miRNA: 3'- gGCGUAg--UGCUU-GU-CGGCG--CCGU-UGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 51261 | 0.66 | 0.78552 |
Target: 5'- gCCGCGUCGuCGGcugccuGCuGCgCGCucGGCGACUu -3' miRNA: 3'- -GGCGUAGU-GCU------UGuCG-GCG--CCGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 48912 | 0.66 | 0.813892 |
Target: 5'- aUCGCcUCaACGAACGGCuUGCcGaCGACCg -3' miRNA: 3'- -GGCGuAG-UGCUUGUCG-GCGcC-GUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 59948 | 0.66 | 0.795145 |
Target: 5'- gCgGCuUCACGAACu-CCGCGacGCGAUCg -3' miRNA: 3'- -GgCGuAGUGCUUGucGGCGC--CGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 6420 | 0.66 | 0.78552 |
Target: 5'- gCCGCGaCuacaagcgGCGGGC-GCCGacgagaGGCGGCCg -3' miRNA: 3'- -GGCGUaG--------UGCUUGuCGGCg-----CCGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 24775 | 0.66 | 0.801786 |
Target: 5'- uCCGCgAUCAUGuggcucaucuucaucCGGCCGUaGCGGCCc -3' miRNA: 3'- -GGCG-UAGUGCuu-------------GUCGGCGcCGUUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 17263 | 0.66 | 0.804606 |
Target: 5'- aCGCgGUCGCGucCucGCgCGCGGCcuuGCCg -3' miRNA: 3'- gGCG-UAGUGCuuGu-CG-GCGCCGu--UGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 23526 | 0.66 | 0.812972 |
Target: 5'- gCGCcaGUCGuCGGACGGCucgaugaCGCGGCucauGCUg -3' miRNA: 3'- gGCG--UAGU-GCUUGUCG-------GCGCCGu---UGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 49866 | 0.66 | 0.813892 |
Target: 5'- -gGCGUC-CGGcGCGGCaGCGGCcggAGCCu -3' miRNA: 3'- ggCGUAGuGCU-UGUCGgCGCCG---UUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 14162 | 0.67 | 0.765819 |
Target: 5'- uUGCGacaACGAacacACGGCgGCGGCGuuggGCCa -3' miRNA: 3'- gGCGUag-UGCU----UGUCGgCGCCGU----UGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 49197 | 0.66 | 0.775741 |
Target: 5'- -gGCAgccuUCGCGAGCAccauGCC-CGGC-GCCa -3' miRNA: 3'- ggCGU----AGUGCUUGU----CGGcGCCGuUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 34010 | 0.66 | 0.775741 |
Target: 5'- cCCGCcgCGagcuCGAGCAccGCCGCuaccgaucgGGCcGCCg -3' miRNA: 3'- -GGCGuaGU----GCUUGU--CGGCG---------CCGuUGG- -5' |
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24024 | 3' | -54.9 | NC_005262.1 | + | 45216 | 0.66 | 0.78552 |
Target: 5'- gCGCAcguUCugGcgcGCGGUguuCGCGGCAcccGCCg -3' miRNA: 3'- gGCGU---AGugCu--UGUCG---GCGCCGU---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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