miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24024 5' -59.1 NC_005262.1 + 4432 0.66 0.550812
Target:  5'- uACGaUC-GCGACGGCCgauggacgGCCCGcGAGg -3'
miRNA:   3'- -UGCcAGuUGCUGCCGGa-------CGGGCuCUU- -5'
24024 5' -59.1 NC_005262.1 + 42467 0.66 0.549766
Target:  5'- gACGGUCuguc-CGGCCUGCCaguucaccucguuCGAGAu -3'
miRNA:   3'- -UGCCAGuugcuGCCGGACGG-------------GCUCUu -5'
24024 5' -59.1 NC_005262.1 + 17085 0.66 0.530034
Target:  5'- cGCGcccGUCGACG-CGGCggGCCgCGAGGAg -3'
miRNA:   3'- -UGC---CAGUUGCuGCCGgaCGG-GCUCUU- -5'
24024 5' -59.1 NC_005262.1 + 48217 0.67 0.499433
Target:  5'- cGCGGUCggUGGCaugcaGGUCaUGCCCGAc-- -3'
miRNA:   3'- -UGCCAGuuGCUG-----CCGG-ACGGGCUcuu -5'
24024 5' -59.1 NC_005262.1 + 46785 0.67 0.499433
Target:  5'- cGCGGuaUCAACGGCGGCgaG-CCGAuGAc -3'
miRNA:   3'- -UGCC--AGUUGCUGCCGgaCgGGCU-CUu -5'
24024 5' -59.1 NC_005262.1 + 50161 0.67 0.486416
Target:  5'- uCGGUCGGCGcaGCGGCCUucgucuccggcuucGUCuCGGGAGc -3'
miRNA:   3'- uGCCAGUUGC--UGCCGGA--------------CGG-GCUCUU- -5'
24024 5' -59.1 NC_005262.1 + 59085 0.68 0.43139
Target:  5'- gACGGUCGaagcGCGACGGCgCgggagGCgUGAGGc -3'
miRNA:   3'- -UGCCAGU----UGCUGCCG-Ga----CGgGCUCUu -5'
24024 5' -59.1 NC_005262.1 + 50585 0.68 0.412961
Target:  5'- aGCGGUucCAGCauuGGCGGCCU-CCUGAGGc -3'
miRNA:   3'- -UGCCA--GUUG---CUGCCGGAcGGGCUCUu -5'
24024 5' -59.1 NC_005262.1 + 51092 0.68 0.412961
Target:  5'- cGCGGUCGcCGGucgcuuccuUGGCCUGCUCGAc-- -3'
miRNA:   3'- -UGCCAGUuGCU---------GCCGGACGGGCUcuu -5'
24024 5' -59.1 NC_005262.1 + 17386 0.69 0.3776
Target:  5'- cCGGUCGAcuCGGCGGCCgacaaUGC-CGAGAc -3'
miRNA:   3'- uGCCAGUU--GCUGCCGG-----ACGgGCUCUu -5'
24024 5' -59.1 NC_005262.1 + 15152 0.69 0.3776
Target:  5'- gGCGGguaCAGCGACcauGCCUGCUCGAa-- -3'
miRNA:   3'- -UGCCa--GUUGCUGc--CGGACGGGCUcuu -5'
24024 5' -59.1 NC_005262.1 + 4572 0.69 0.3776
Target:  5'- uCGcGcCAGCGGCGGCgCUGCUCGGGc- -3'
miRNA:   3'- uGC-CaGUUGCUGCCG-GACGGGCUCuu -5'
24024 5' -59.1 NC_005262.1 + 56343 0.7 0.313229
Target:  5'- cUGGUCGAgGGCGGCgUGCCCcgcGAGc- -3'
miRNA:   3'- uGCCAGUUgCUGCCGgACGGG---CUCuu -5'
24024 5' -59.1 NC_005262.1 + 54520 0.71 0.270645
Target:  5'- cCGGUCGgcgcgcGCGGCGGCCUGCgccuCCGcGAGc -3'
miRNA:   3'- uGCCAGU------UGCUGCCGGACG----GGCuCUU- -5'
24024 5' -59.1 NC_005262.1 + 25673 0.73 0.194464
Target:  5'- cUGGUCAucgaguCGACGGCCgaggGCCgCGAGGg -3'
miRNA:   3'- uGCCAGUu-----GCUGCCGGa---CGG-GCUCUu -5'
24024 5' -59.1 NC_005262.1 + 3754 0.73 0.193453
Target:  5'- cACGGcCAGCGACGGCCgcgaguacaaCCGGGAGa -3'
miRNA:   3'- -UGCCaGUUGCUGCCGGacg-------GGCUCUU- -5'
24024 5' -59.1 NC_005262.1 + 49512 0.74 0.161734
Target:  5'- cGCGaUCGcCGAgGGCCUGCUCGAGGAg -3'
miRNA:   3'- -UGCcAGUuGCUgCCGGACGGGCUCUU- -5'
24024 5' -59.1 NC_005262.1 + 29088 1.05 0.000913
Target:  5'- gACGGUCAACGACGGCCUGCCCGAGAAc -3'
miRNA:   3'- -UGCCAGUUGCUGCCGGACGGGCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.